Wall clock time and date at job start Mon Mar 30 2020 05:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48500 * 109.47370 * 265.14166 * 3 2 1 5 5 H 1.48504 * 109.46901 * 25.14093 * 3 2 1 6 6 H 1.48502 * 109.47188 * 145.13733 * 3 2 1 7 7 C 1.37874 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00056 * 349.91096 * 7 2 1 9 9 C 1.50697 * 120.00317 * 169.91208 * 7 2 1 10 10 C 1.50703 * 115.55350 * 88.80535 * 9 7 2 11 11 C 1.38278 * 119.94034 * 234.68362 * 10 9 7 12 12 C 1.38155 * 120.07253 * 179.74599 * 11 10 9 13 13 C 1.38712 * 119.95754 * 0.56994 * 12 11 10 14 14 O 1.35924 * 120.05732 * 179.70604 * 13 12 11 15 15 C 1.38818 * 119.87667 * 359.42719 * 13 12 11 16 16 Cl 1.73606 * 120.03254 * 180.25499 * 15 13 12 17 17 C 1.38247 * 119.93486 * 54.70001 * 10 9 7 18 18 C 1.52998 * 117.50112 * 234.47895 * 9 7 2 19 19 C 1.53005 * 117.49541 * 303.13799 * 9 7 2 20 20 H 0.96999 * 120.00092 * 0.02562 * 1 2 3 21 21 H 1.07996 * 119.96390 * 0.02562 * 11 10 9 22 22 H 1.07997 * 120.01937 * 180.27791 * 12 11 10 23 23 H 0.96700 * 113.99664 * 269.71779 * 14 13 12 24 24 H 1.07998 * 119.98182 * 359.97438 * 17 10 9 25 25 H 1.09000 * 117.50173 * 215.00201 * 18 9 7 26 26 H 1.09002 * 117.49550 * 0.02571 * 18 9 7 27 27 H 1.08998 * 117.49931 * 359.97438 * 19 9 7 28 28 H 1.09001 * 117.49615 * 144.99560 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5994 1.9871 -1.3950 5 1 1.3990 2.6801 0.5948 6 1 3.4916 1.4720 0.8003 7 6 2.0045 -1.1940 -0.0005 8 1 1.4770 -2.1222 0.1629 9 6 3.4940 -1.2041 -0.2291 10 6 4.3426 -1.0618 1.0082 11 6 5.2940 -0.0610 1.0811 12 6 6.0698 0.0752 2.2162 13 6 5.9021 -0.8002 3.2790 14 8 6.6684 -0.6717 4.3942 15 6 4.9464 -1.8042 3.2037 16 17 4.7286 -2.8980 4.5341 17 6 4.1685 -1.9323 2.0680 18 6 4.0300 -2.0905 -1.3551 19 6 4.0149 -0.5688 -1.5199 20 1 -0.4850 0.8400 -0.0004 21 1 5.4277 0.6177 0.2518 22 1 6.8095 0.8600 2.2740 23 1 7.4906 -1.1801 4.3672 24 1 3.4246 -2.7130 2.0086 25 1 4.9963 -2.5708 -1.2010 26 1 3.3052 -2.6661 -1.9308 27 1 3.2802 -0.1439 -2.2038 28 1 4.9713 -0.0479 -1.4741 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260205661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:00 Heat of formation + Delta-G solvation = -19.867671 kcal Electronic energy + Delta-G solvation = -14592.151483 eV Core-core repulsion = 12020.130401 eV Total energy + Delta-G solvation = -2572.021082 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.94827 -38.92284 -37.45945 -36.65611 -34.24940 -31.80020 -30.36691 -27.85470 -24.20569 -24.02670 -22.75520 -21.02898 -19.44753 -18.70958 -17.14338 -16.82285 -16.53090 -16.23166 -15.76130 -14.78323 -14.74507 -14.60806 -13.93745 -13.48509 -13.22832 -13.03346 -12.96917 -12.38583 -12.13264 -12.08580 -11.85489 -11.69219 -11.36787 -11.09834 -10.70313 -10.45003 -9.75053 -9.21448 -8.31449 -6.38392 0.16342 0.31314 1.15637 1.36682 1.43305 1.53529 2.38714 2.59854 3.03931 3.17174 3.26421 3.86629 3.97944 4.27330 4.36325 4.38958 4.51391 4.67769 4.85329 4.90337 4.98257 5.11612 5.24779 5.40635 5.48955 5.63712 5.74260 5.85266 6.28232 6.69113 6.80768 7.31551 8.83250 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.026572 B = 0.009044 C = 0.008712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.470309 B = 3095.065277 C = 3213.142076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.025 3.975 3 Si 0.923 3.077 4 H -0.257 1.257 5 H -0.307 1.307 6 H -0.218 1.218 7 C -0.487 4.487 8 H 0.032 0.968 9 C 0.003 3.997 10 C -0.029 4.029 11 C -0.110 4.110 12 C -0.128 4.128 13 C 0.098 3.902 14 O -0.492 6.492 15 C -0.071 4.071 16 Cl -0.066 7.066 17 C -0.095 4.095 18 C -0.156 4.156 19 C -0.185 4.185 20 H 0.265 0.735 21 H 0.142 0.858 22 H 0.164 0.836 23 H 0.407 0.593 24 H 0.118 0.882 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.385 -0.528 3.750 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.173 4.173 3 Si 0.747 3.253 4 H -0.181 1.181 5 H -0.235 1.235 6 H -0.141 1.141 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.002 3.998 10 C -0.030 4.030 11 C -0.128 4.128 12 C -0.147 4.147 13 C 0.052 3.948 14 O -0.305 6.305 15 C -0.098 4.098 16 Cl -0.038 7.038 17 C -0.114 4.114 18 C -0.193 4.193 19 C -0.222 4.222 20 H 0.074 0.926 21 H 0.160 0.840 22 H 0.182 0.818 23 H 0.266 0.734 24 H 0.136 0.864 25 H 0.122 0.878 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.774 -0.173 4.066 16.291 hybrid contribution -0.455 0.075 0.003 0.461 sum 15.319 -0.098 4.069 15.850 Atomic orbital electron populations 1.70062 1.08539 1.28158 1.51707 1.25822 0.95120 1.03036 0.93317 0.86133 0.80816 0.78096 0.80246 1.18148 1.23451 1.14068 1.20330 0.89680 0.93114 1.49277 0.94941 1.18016 0.92025 1.04211 0.85564 1.19673 0.93712 0.94157 0.95483 1.21290 0.94886 0.97574 0.99051 1.21525 1.01578 1.00181 0.91385 1.18100 0.94256 0.94427 0.87969 1.84808 1.37083 1.72598 1.35967 1.21456 1.01925 0.95615 0.90839 1.98325 1.96659 1.62626 1.46155 1.20728 0.98415 1.00462 0.91753 1.22910 1.01664 0.92661 1.02090 1.23103 1.02114 0.96201 1.00799 0.92607 0.84027 0.81834 0.73382 0.86384 0.87776 0.90177 0.90620 0.87118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.72 13.96 21.45 0.30 -58.42 15 2 C 0.03 1.44 5.45 84.65 0.46 1.90 15 3 Si 0.92 42.47 25.44 68.60 1.75 44.22 15 4 H -0.26 -11.02 7.09 99.48 0.70 -10.31 15 5 H -0.31 -14.69 7.11 99.48 0.71 -13.98 15 6 H -0.22 -8.95 4.61 99.48 0.46 -8.49 15 7 C -0.49 -26.90 9.11 25.60 0.23 -26.66 15 8 H 0.03 2.03 8.06 -2.91 -0.02 2.00 15 9 C 0.00 0.12 1.11 -53.67 -0.06 0.06 15 10 C -0.03 -1.14 4.65 -19.85 -0.09 -1.23 15 11 C -0.11 -3.53 7.36 22.26 0.16 -3.37 15 12 C -0.13 -3.52 9.99 22.36 0.22 -3.30 15 13 C 0.10 2.85 6.70 22.52 0.15 3.00 15 14 O -0.49 -11.73 12.96 -92.69 -1.20 -12.93 15 15 C -0.07 -2.39 6.33 22.41 0.14 -2.24 15 16 Cl -0.07 -2.02 28.51 -2.72 -0.08 -2.10 15 17 C -0.09 -3.65 9.23 22.28 0.21 -3.44 15 18 C -0.16 -5.75 9.94 30.62 0.30 -5.45 15 19 C -0.19 -6.88 7.36 30.62 0.23 -6.66 15 20 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 21 H 0.14 4.05 6.22 -2.91 -0.02 4.03 15 22 H 0.16 3.33 8.06 -2.91 -0.02 3.31 15 23 H 0.41 5.50 9.06 -74.06 -0.67 4.83 15 24 H 0.12 4.89 8.06 -2.91 -0.02 4.86 15 25 H 0.10 3.21 8.14 -2.39 -0.02 3.19 15 26 H 0.08 3.09 8.14 -2.39 -0.02 3.07 15 27 H 0.08 3.06 7.56 -2.39 -0.02 3.05 15 28 H 0.11 3.33 6.57 -2.39 -0.02 3.32 15 Total: -1.00 -65.95 255.10 2.99 -62.96 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.27 Total: 13.65 kcal Atomic # 6 Polarization: -49.34 SS G_CDS: 1.96 Total: -47.38 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 0.30 Total: -58.42 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.20 Total: -12.93 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.75 Total: 44.22 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -65.95 2.99 -62.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260205661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.094 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds