Wall clock time and date at job start Mon Mar 30 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99774 * 2 1 4 4 H 1.48500 * 109.47218 * 239.99774 * 3 2 1 5 5 H 1.48492 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46961 * 120.00036 * 3 2 1 7 7 C 1.37875 * 120.00827 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00739 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99183 * 359.97438 * 7 2 1 10 10 C 1.53012 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46944 * 179.97438 * 10 9 7 12 12 C 1.38265 * 119.94607 * 264.99681 * 11 10 9 13 13 C 1.38204 * 120.16137 * 179.70071 * 12 11 10 14 14 C 1.38620 * 120.07446 * 0.02790 * 13 12 11 15 15 C 1.39173 * 119.83905 * 359.97438 * 14 13 12 16 16 C 1.38407 * 119.94338 * 84.72622 * 11 10 9 17 17 F 1.35108 * 120.00710 * 0.25393 * 16 11 10 18 18 O 1.36556 * 108.65366 * 180.02562 * 15 14 13 19 19 C 1.43999 * 105.46779 * 17.27536 * 18 15 14 20 20 O 1.36510 * 131.50806 * 180.02562 * 14 13 12 21 21 H 0.96994 * 120.00347 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47929 * 60.00735 * 9 7 2 23 23 H 1.09003 * 109.47860 * 299.99891 * 9 7 2 24 24 H 1.08997 * 109.46810 * 60.00213 * 10 9 7 25 25 H 1.09004 * 109.46574 * 299.99843 * 10 9 7 26 26 H 1.07999 * 119.91960 * 359.72199 * 12 11 10 27 27 H 1.07997 * 119.96587 * 180.02562 * 13 12 11 28 28 H 1.08996 * 110.57479 * 91.45928 * 19 18 15 29 29 H 1.09000 * 110.57431 * 214.33834 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4990 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4920 -4.9671 0.0001 12 6 1.2378 -5.6167 1.1939 13 6 0.5418 -6.8107 1.2002 14 6 0.0965 -7.3615 0.0086 15 6 0.3516 -6.7090 -1.1939 16 6 1.0507 -5.5106 -1.1938 17 9 1.3000 -4.8739 -2.3591 18 8 -0.1841 -7.4445 -2.2122 19 6 -1.1210 -8.3413 -1.5865 20 8 -0.5992 -8.5061 -0.2548 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5568 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6042 0.8895 25 1 2.8721 -3.6042 -0.8906 26 1 1.5837 -5.1899 2.1237 27 1 0.3446 -7.3152 2.1345 28 1 -2.1154 -7.8960 -1.5557 29 1 -1.1443 -9.2972 -2.1099 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260246435.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:15 Heat of formation + Delta-G solvation = -93.102425 kcal Electronic energy + Delta-G solvation = -16376.105278 eV Core-core repulsion = 13372.572124 eV Total energy + Delta-G solvation = -3003.533154 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.50702 -42.06023 -37.95856 -36.21949 -33.87384 -31.87741 -29.96574 -28.76230 -26.04840 -24.85377 -22.83582 -22.43041 -20.53406 -18.21880 -17.88583 -17.50666 -16.43719 -16.14028 -15.50987 -15.09516 -14.93310 -14.47258 -14.13364 -13.80781 -13.00754 -12.95889 -12.68852 -12.51999 -12.23005 -11.76762 -11.62905 -11.22949 -10.91080 -10.70227 -10.49087 -9.91304 -9.59220 -9.15841 -8.38583 -8.35094 -7.91154 -6.00816 -4.04212 1.17443 1.23142 2.71146 3.33620 3.38034 3.38771 3.40408 3.61876 4.25614 4.45212 4.62588 4.75324 4.91330 5.13350 5.17522 5.28645 5.34979 5.41764 5.92656 6.04741 6.25879 6.33560 6.43379 6.55938 6.67530 6.93575 7.19026 7.63675 7.75462 7.97372 8.37153 9.01874 9.59859 11.10308 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.045964 B = 0.005515 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.023107 B = 5076.281726 C = 5261.177769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.077 4.077 11 C -0.080 4.080 12 C -0.083 4.083 13 C -0.107 4.107 14 C 0.039 3.961 15 C -0.010 4.010 16 C 0.124 3.876 17 F -0.123 7.123 18 O -0.304 6.304 19 C 0.213 3.787 20 O -0.309 6.309 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.020 0.980 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.149 0.851 27 H 0.138 0.862 28 H 0.083 0.917 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.743 -15.395 0.586 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.114 4.114 11 C -0.081 4.081 12 C -0.102 4.102 13 C -0.126 4.126 14 C -0.005 4.005 15 C -0.055 4.055 16 C 0.104 3.896 17 F -0.102 7.102 18 O -0.220 6.220 19 C 0.101 3.899 20 O -0.226 6.226 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.038 0.962 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.166 0.834 27 H 0.156 0.844 28 H 0.101 0.899 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.904 -15.451 0.418 15.483 hybrid contribution 0.138 0.860 -0.433 0.973 sum -0.766 -14.591 -0.015 14.611 Atomic orbital electron populations 1.69953 1.06083 1.26805 1.50456 1.25015 0.94846 0.99269 0.95204 0.86635 0.79564 0.83018 0.78653 1.20191 1.21299 1.20184 1.21168 0.93054 0.90791 1.51129 0.92495 1.19097 0.93630 0.90345 0.97724 1.20835 0.98484 0.89735 1.02357 1.20314 0.99226 0.98396 0.90181 1.20794 0.97850 0.93442 0.98078 1.20092 1.01316 0.96269 0.94941 1.19457 1.00148 0.86774 0.94137 1.19662 1.04338 0.94830 0.86708 1.16512 1.01878 0.88337 0.82893 1.91526 1.92241 1.80851 1.45564 1.87398 1.55960 1.49105 1.29577 1.25596 0.92219 0.94858 0.77202 1.87324 1.67131 1.34900 1.33220 0.92877 0.96294 0.96182 0.91023 0.91443 0.83361 0.84390 0.89895 0.85272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 15 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 15 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.03 0.75 4.96 -27.88 -0.14 0.61 15 10 C -0.08 -1.56 5.05 -27.88 -0.14 -1.70 15 11 C -0.08 -1.45 5.14 -104.55 -0.54 -1.98 15 12 C -0.08 -1.24 9.67 -39.58 -0.38 -1.62 15 13 C -0.11 -1.46 10.06 -39.45 -0.40 -1.86 15 14 C 0.04 0.60 7.15 -39.09 -0.28 0.32 15 15 C -0.01 -0.18 7.13 -39.05 -0.28 -0.46 15 16 C 0.12 2.33 7.25 -39.33 -0.29 2.05 15 17 F -0.12 -2.54 16.56 2.25 0.04 -2.50 15 18 O -0.30 -4.78 11.41 -45.87 -0.52 -5.30 15 19 C 0.21 2.39 8.89 101.05 0.90 3.29 15 20 O -0.31 -4.22 11.40 -45.72 -0.52 -4.74 15 21 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.07 1.32 8.05 -51.93 -0.42 0.91 15 25 H 0.07 1.38 7.79 -51.93 -0.40 0.98 15 26 H 0.15 1.85 8.06 -52.49 -0.42 1.43 15 27 H 0.14 1.46 8.06 -52.49 -0.42 1.04 15 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 29 H 0.13 0.95 8.14 -51.93 -0.42 0.53 15 LS Contribution 263.95 15.07 3.98 3.98 Total: -1.00 -31.86 263.95 -6.17 -38.03 By element: Atomic # 1 Polarization: -2.17 SS G_CDS: -2.90 Total: -5.07 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -1.95 Total: -14.78 kcal Atomic # 7 Polarization: -26.88 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -1.04 Total: -10.04 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.86 -6.17 -38.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246435.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.077 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds