Wall clock time and date at job start Mon Mar 30 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99774 * 2 1 4 4 H 1.48500 * 109.47218 * 239.99774 * 3 2 1 5 5 H 1.48492 * 109.46800 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46961 * 120.00036 * 3 2 1 7 7 C 1.37875 * 120.00827 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00739 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99183 * 359.97438 * 7 2 1 10 10 C 1.53012 * 109.46944 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46944 * 179.97438 * 10 9 7 12 12 C 1.38265 * 119.94607 * 264.99681 * 11 10 9 13 13 C 1.38204 * 120.16137 * 179.70071 * 12 11 10 14 14 C 1.38620 * 120.07446 * 0.02790 * 13 12 11 15 15 C 1.39173 * 119.83905 * 359.97438 * 14 13 12 16 16 C 1.38407 * 119.94338 * 84.72622 * 11 10 9 17 17 F 1.35108 * 120.00710 * 0.25393 * 16 11 10 18 18 O 1.36556 * 108.65366 * 180.02562 * 15 14 13 19 19 C 1.43999 * 105.46779 * 17.27536 * 18 15 14 20 20 O 1.36510 * 131.50806 * 180.02562 * 14 13 12 21 21 H 0.96994 * 120.00347 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.47929 * 60.00735 * 9 7 2 23 23 H 1.09003 * 109.47860 * 299.99891 * 9 7 2 24 24 H 1.08997 * 109.46810 * 60.00213 * 10 9 7 25 25 H 1.09004 * 109.46574 * 299.99843 * 10 9 7 26 26 H 1.07999 * 119.91960 * 359.72199 * 12 11 10 27 27 H 1.07997 * 119.96587 * 180.02562 * 13 12 11 28 28 H 1.08996 * 110.57479 * 91.45928 * 19 18 15 29 29 H 1.09000 * 110.57431 * 214.33834 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4990 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4920 -4.9671 0.0001 12 6 1.2378 -5.6167 1.1939 13 6 0.5418 -6.8107 1.2002 14 6 0.0965 -7.3615 0.0086 15 6 0.3516 -6.7090 -1.1939 16 6 1.0507 -5.5106 -1.1938 17 9 1.3000 -4.8739 -2.3591 18 8 -0.1841 -7.4445 -2.2122 19 6 -1.1210 -8.3413 -1.5865 20 8 -0.5992 -8.5061 -0.2548 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5568 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6042 0.8895 25 1 2.8721 -3.6042 -0.8906 26 1 1.5837 -5.1899 2.1237 27 1 0.3446 -7.3152 2.1345 28 1 -2.1154 -7.8960 -1.5557 29 1 -1.1443 -9.2972 -2.1099 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260246435.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:15 Heat of formation + Delta-G solvation = -112.978760 kcal Electronic energy + Delta-G solvation = -16376.967181 eV Core-core repulsion = 13372.572124 eV Total energy + Delta-G solvation = -3004.395057 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.99310 -43.17624 -39.22954 -37.33617 -35.76917 -33.69298 -31.18195 -30.37187 -27.37391 -26.35277 -24.14556 -23.96378 -22.18611 -19.43288 -19.15935 -18.71566 -18.37035 -17.45296 -16.80780 -16.51842 -16.40776 -16.14925 -15.26107 -15.11526 -14.76729 -14.44088 -14.07942 -13.95318 -13.67059 -13.37542 -13.00118 -12.78910 -12.75233 -12.38796 -11.99462 -11.77391 -11.38266 -11.20553 -10.54529 -9.68295 -9.14988 -8.18703 -6.30676 -0.05818 -0.03448 1.41836 1.45257 1.52860 1.61268 2.36232 2.37883 2.43893 3.02240 3.14547 3.62378 3.72793 3.78970 4.00925 4.05728 4.15385 4.34800 4.56290 4.78134 4.79836 4.96678 5.08617 5.12581 5.26062 5.36065 5.49696 5.71456 5.83214 5.99816 6.22095 6.85570 7.38671 8.92841 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.045964 B = 0.005515 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.023107 B = 5076.281726 C = 5261.177769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.036 3.964 10 C -0.063 4.063 11 C -0.102 4.102 12 C -0.073 4.073 13 C -0.093 4.093 14 C 0.044 3.956 15 C -0.025 4.025 16 C 0.090 3.910 17 F -0.146 7.146 18 O -0.325 6.325 19 C 0.204 3.796 20 O -0.309 6.309 21 H 0.264 0.736 22 H -0.020 1.020 23 H 0.003 0.997 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.177 0.823 27 H 0.180 0.820 28 H 0.102 0.898 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -16.470 1.997 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.001 4.001 10 C -0.100 4.100 11 C -0.103 4.103 12 C -0.091 4.091 13 C -0.111 4.111 14 C -0.001 4.001 15 C -0.070 4.070 16 C 0.070 3.930 17 F -0.125 7.125 18 O -0.242 6.242 19 C 0.093 3.907 20 O -0.225 6.225 21 H 0.072 0.928 22 H -0.002 1.002 23 H 0.021 0.979 24 H 0.112 0.888 25 H 0.075 0.925 26 H 0.194 0.806 27 H 0.197 0.803 28 H 0.120 0.880 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.503 -16.550 1.829 16.658 hybrid contribution -0.080 1.058 -0.886 1.382 sum -0.583 -15.492 0.943 15.532 Atomic orbital electron populations 1.70097 1.07899 1.27862 1.51529 1.25993 0.95742 1.03426 0.94649 0.85486 0.78243 0.77946 0.79290 1.19496 1.21012 1.18577 1.21661 0.93766 0.92019 1.50758 0.91608 1.18924 0.94011 0.92291 0.94914 1.20531 0.97398 0.89202 1.02876 1.20189 1.00693 0.98072 0.91358 1.21129 0.96816 0.93457 0.97702 1.20516 0.99203 0.95385 0.95976 1.19741 0.99573 0.86858 0.93917 1.19768 1.04465 0.94675 0.88086 1.16892 1.03861 0.89666 0.82580 1.91452 1.92693 1.81518 1.46835 1.87367 1.56937 1.49619 1.30318 1.26200 0.91874 0.96257 0.76334 1.87319 1.66857 1.34012 1.34335 0.92778 1.00208 0.97887 0.88847 0.92486 0.80591 0.80311 0.88041 0.81140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.12 15 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 15 3 Si 0.97 44.28 29.54 68.60 2.03 46.30 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 15 6 H -0.26 -11.27 7.11 99.48 0.71 -10.57 15 7 C -0.54 -30.98 9.11 25.60 0.23 -30.75 15 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 15 9 C 0.04 1.90 4.96 29.85 0.15 2.05 15 10 C -0.06 -2.60 5.05 29.85 0.15 -2.45 15 11 C -0.10 -3.70 5.14 -19.82 -0.10 -3.80 15 12 C -0.07 -2.01 9.67 22.27 0.22 -1.80 15 13 C -0.09 -2.23 10.06 22.35 0.22 -2.00 15 14 C 0.04 1.24 7.15 22.59 0.16 1.40 15 15 C -0.02 -0.85 7.13 22.61 0.16 -0.69 15 16 C 0.09 3.49 7.25 22.43 0.16 3.66 15 17 F -0.15 -6.42 16.56 44.97 0.74 -5.67 15 18 O -0.33 -10.06 11.41 -76.71 -0.88 -10.94 15 19 C 0.20 4.09 8.89 113.37 1.01 5.09 15 20 O -0.31 -7.55 11.40 -76.17 -0.87 -8.42 15 21 H 0.26 15.24 8.31 -92.71 -0.77 14.46 15 22 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 15 23 H 0.00 0.15 8.14 -2.39 -0.02 0.13 15 24 H 0.09 3.38 8.05 -2.39 -0.02 3.36 15 25 H 0.06 2.42 7.79 -2.39 -0.02 2.40 15 26 H 0.18 3.80 8.06 -2.91 -0.02 3.78 15 27 H 0.18 2.86 8.06 -2.91 -0.02 2.83 15 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 15 29 H 0.17 1.93 8.14 -2.39 -0.02 1.91 15 Total: -1.00 -71.18 263.95 5.30 -65.88 By element: Atomic # 1 Polarization: -2.36 SS G_CDS: 1.17 Total: -1.19 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 2.83 Total: -28.83 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -1.74 Total: -19.36 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.74 Total: -5.67 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -71.18 5.30 -65.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246435.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.101 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds