Wall clock time and date at job start Mon Mar 30 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00244 * 2 1 4 4 H 1.48500 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47184 * 300.00391 * 3 2 1 6 6 H 1.48506 * 109.46860 * 59.99819 * 3 2 1 7 7 C 1.37885 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.20138 * 55.52048 * 10 9 7 12 12 C 1.54147 * 109.27496 * 296.03464 * 10 9 7 13 13 S 1.83299 * 101.07840 * 211.46785 * 12 10 9 14 14 C 1.77448 * 96.60325 * 24.84906 * 13 12 10 15 15 C 1.38843 * 130.54923 * 164.60342 * 14 13 12 16 16 C 1.38031 * 120.21029 * 180.38568 * 15 14 13 17 17 C 1.38283 * 119.32082 * 359.62762 * 16 15 14 18 18 C 1.37932 * 120.51274 * 0.49521 * 17 16 15 19 19 F 1.35104 * 119.49786 * 179.77822 * 18 17 16 20 20 C 1.38845 * 108.28040 * 344.72585 * 14 13 12 21 21 H 0.96990 * 120.00003 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47595 * 59.99830 * 9 7 2 23 23 H 1.09002 * 109.46896 * 300.00015 * 9 7 2 24 24 H 1.08994 * 111.09779 * 329.42868 * 12 10 9 25 25 H 1.09000 * 111.09155 * 93.51874 * 12 10 9 26 26 H 1.07995 * 119.89593 * 0.36111 * 15 14 13 27 27 H 1.08005 * 120.33883 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.74360 * 180.17357 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9205 -3.5563 0.8476 12 6 3.0623 -3.6333 -1.3082 13 16 3.3798 -5.4203 -1.5646 14 6 1.9797 -6.0099 -0.6477 15 6 1.3826 -7.2630 -0.6185 16 6 0.2792 -7.4882 0.1797 17 6 -0.2185 -6.4562 0.9539 18 6 0.3724 -5.2102 0.9237 19 9 -0.1335 -4.2154 1.6850 20 6 1.4905 -4.9626 0.1215 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5564 -0.8919 23 1 0.6240 -2.5575 0.8880 24 1 2.4768 -3.2171 -2.1279 25 1 3.9946 -3.0842 -1.1759 26 1 1.7824 -8.0640 -1.2226 27 1 -0.1871 -8.4621 0.2037 28 1 -1.0798 -6.6256 1.5831 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260246712.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:19 Heat of formation + Delta-G solvation = -29.429305 kcal Electronic energy + Delta-G solvation = -14475.106451 eV Core-core repulsion = 11917.087241 eV Total energy + Delta-G solvation = -2558.019210 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.42852 -38.94961 -35.45146 -32.54801 -30.32642 -29.48836 -27.27846 -24.36301 -22.54423 -22.13379 -19.86194 -17.82060 -16.59004 -16.05890 -15.42922 -15.35353 -15.06832 -14.59164 -14.12696 -13.92226 -12.98522 -12.49768 -12.41081 -12.18139 -12.05966 -11.85397 -11.45600 -11.02783 -10.74845 -10.61536 -10.37634 -9.98127 -9.61415 -9.20882 -9.11954 -8.40320 -8.30407 -7.19610 -6.05565 -4.09228 1.25204 1.36999 1.91655 2.57875 3.27572 3.35581 3.38374 3.68860 4.40126 4.58099 4.85915 4.98262 5.16025 5.30688 5.42432 5.50856 5.59474 5.75394 6.09501 6.20373 6.28290 6.37399 6.42405 6.46186 6.71034 7.05877 7.57528 7.67498 7.91276 8.29243 8.96272 9.54893 11.05440 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.008106 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.026396 B = 3453.407678 C = 4222.367840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.054 4.054 11 H 0.090 0.910 12 C -0.046 4.046 13 S -0.182 6.182 14 C -0.056 4.056 15 C -0.107 4.107 16 C -0.087 4.087 17 C -0.164 4.164 18 C 0.131 3.869 19 F -0.124 7.124 20 C -0.116 4.116 21 H 0.261 0.739 22 H 0.019 0.981 23 H 0.043 0.957 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -12.742 -0.475 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.016 4.016 10 C -0.073 4.073 11 H 0.108 0.892 12 C -0.194 4.194 13 S 0.062 5.938 14 C -0.168 4.168 15 C -0.131 4.131 16 C -0.106 4.106 17 C -0.185 4.185 18 C 0.110 3.890 19 F -0.103 7.103 20 C -0.122 4.122 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.061 0.939 24 H 0.121 0.879 25 H 0.131 0.869 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.924 -13.106 -1.162 13.478 hybrid contribution -0.699 1.728 0.798 2.028 sum 2.224 -11.378 -0.364 11.599 Atomic orbital electron populations 1.69978 1.06069 1.26627 1.50200 1.25000 0.94804 0.99230 0.95142 0.86549 0.80094 0.83814 0.77638 1.19683 1.20997 1.20978 1.21190 0.92933 0.90644 1.51362 0.92442 1.19420 0.93325 0.89763 0.99076 1.20775 0.97748 0.92363 0.96426 0.89160 1.24447 1.04011 0.89738 1.01159 1.85757 1.31288 1.09396 1.67407 1.21937 0.98504 0.96266 1.00127 1.20375 0.96593 0.95032 1.01145 1.20799 0.95694 0.98569 0.95587 1.20932 1.02399 0.91905 1.03298 1.17575 0.93202 0.85502 0.92758 1.91530 1.86046 1.59599 1.73079 1.21330 0.96593 0.96713 0.97580 0.92932 0.96263 0.93887 0.87862 0.86931 0.85443 0.84675 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 15 2 C 0.06 1.68 5.46 -17.81 -0.10 1.59 15 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.52 -14.16 8.58 -34.44 -0.30 -14.46 15 8 H 0.06 1.49 7.58 -52.49 -0.40 1.09 15 9 C 0.02 0.56 4.07 -27.88 -0.11 0.45 15 10 C -0.05 -1.11 2.55 -91.09 -0.23 -1.35 15 11 H 0.09 1.87 8.14 -51.93 -0.42 1.45 15 12 C -0.05 -0.85 6.33 37.76 0.24 -0.61 15 13 S -0.18 -3.02 23.08 -107.50 -2.48 -5.50 15 14 C -0.06 -0.95 6.48 -39.13 -0.25 -1.20 15 15 C -0.11 -1.50 10.05 -39.43 -0.40 -1.90 15 16 C -0.09 -1.08 10.08 -39.64 -0.40 -1.48 15 17 C -0.16 -2.39 9.96 -39.68 -0.40 -2.78 15 18 C 0.13 2.42 7.13 -39.10 -0.28 2.14 15 19 F -0.12 -2.59 14.62 2.25 0.03 -2.56 15 20 C -0.12 -2.22 5.57 -103.73 -0.58 -2.80 15 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 22 H 0.02 0.52 8.07 -51.93 -0.42 0.10 15 23 H 0.04 1.18 5.63 -51.93 -0.29 0.88 15 24 H 0.10 1.97 7.88 -51.93 -0.41 1.56 15 25 H 0.11 1.92 8.14 -51.93 -0.42 1.50 15 26 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.14 1.18 8.06 -52.48 -0.42 0.76 15 28 H 0.14 1.62 8.06 -52.49 -0.42 1.19 15 LS Contribution 256.03 15.07 3.86 3.86 Total: -1.00 -29.64 256.03 -8.44 -38.08 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -2.77 Total: -2.00 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -2.80 Total: -22.40 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.03 Total: -2.56 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.48 Total: -5.50 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.64 -8.44 -38.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246712.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.652 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds