Wall clock time and date at job start Mon Mar 30 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00244 * 2 1 4 4 H 1.48500 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47184 * 300.00391 * 3 2 1 6 6 H 1.48506 * 109.46860 * 59.99819 * 3 2 1 7 7 C 1.37885 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.20138 * 55.52048 * 10 9 7 12 12 C 1.54147 * 109.27496 * 296.03464 * 10 9 7 13 13 S 1.83299 * 101.07840 * 211.46785 * 12 10 9 14 14 C 1.77448 * 96.60325 * 24.84906 * 13 12 10 15 15 C 1.38843 * 130.54923 * 164.60342 * 14 13 12 16 16 C 1.38031 * 120.21029 * 180.38568 * 15 14 13 17 17 C 1.38283 * 119.32082 * 359.62762 * 16 15 14 18 18 C 1.37932 * 120.51274 * 0.49521 * 17 16 15 19 19 F 1.35104 * 119.49786 * 179.77822 * 18 17 16 20 20 C 1.38845 * 108.28040 * 344.72585 * 14 13 12 21 21 H 0.96990 * 120.00003 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47595 * 59.99830 * 9 7 2 23 23 H 1.09002 * 109.46896 * 300.00015 * 9 7 2 24 24 H 1.08994 * 111.09779 * 329.42868 * 12 10 9 25 25 H 1.09000 * 111.09155 * 93.51874 * 12 10 9 26 26 H 1.07995 * 119.89593 * 0.36111 * 15 14 13 27 27 H 1.08005 * 120.33883 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.74360 * 180.17357 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 1 2.9205 -3.5563 0.8476 12 6 3.0623 -3.6333 -1.3082 13 16 3.3798 -5.4203 -1.5646 14 6 1.9797 -6.0099 -0.6477 15 6 1.3826 -7.2630 -0.6185 16 6 0.2792 -7.4882 0.1797 17 6 -0.2185 -6.4562 0.9539 18 6 0.3724 -5.2102 0.9237 19 9 -0.1335 -4.2154 1.6850 20 6 1.4905 -4.9626 0.1215 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5564 -0.8919 23 1 0.6240 -2.5575 0.8880 24 1 2.4768 -3.2171 -2.1279 25 1 3.9946 -3.0842 -1.1759 26 1 1.7824 -8.0640 -1.2226 27 1 -0.1871 -8.4621 0.2037 28 1 -1.0798 -6.6256 1.5831 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260246712.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:19 Heat of formation + Delta-G solvation = -45.430610 kcal Electronic energy + Delta-G solvation = -14475.800320 eV Core-core repulsion = 11917.087241 eV Total energy + Delta-G solvation = -2558.713078 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.91243 -40.23606 -37.04527 -34.55149 -31.63065 -30.89836 -29.08067 -26.13528 -23.85979 -23.65281 -21.45564 -19.17638 -18.58006 -17.44197 -16.86841 -16.74799 -16.53488 -16.41143 -15.67344 -15.23757 -14.48005 -14.23161 -14.02494 -13.77928 -13.48312 -13.23547 -13.00455 -12.82704 -12.43911 -12.30093 -12.06853 -11.73112 -11.15452 -11.07897 -10.65253 -10.55804 -9.62339 -8.49384 -8.20950 -6.32330 0.02343 0.12554 0.59975 1.17134 1.39125 1.39771 1.52442 2.38872 2.49262 3.12866 3.31664 3.49618 3.74275 3.96010 4.02555 4.18430 4.33607 4.49794 4.68004 4.76869 4.88511 5.04755 5.11129 5.17762 5.28182 5.43819 5.57895 5.78119 5.85011 6.16701 6.82829 7.36561 8.91284 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.008106 C = 0.006630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.026396 B = 3453.407678 C = 4222.367840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.534 4.534 8 H 0.068 0.932 9 C 0.033 3.967 10 C -0.047 4.047 11 H 0.081 0.919 12 C -0.051 4.051 13 S -0.147 6.147 14 C -0.073 4.073 15 C -0.099 4.099 16 C -0.063 4.063 17 C -0.156 4.156 18 C 0.092 3.908 19 F -0.151 7.151 20 C -0.151 4.151 21 H 0.263 0.737 22 H -0.014 1.014 23 H 0.014 0.986 24 H 0.089 0.911 25 H 0.123 0.877 26 H 0.162 0.838 27 H 0.189 0.811 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.871 -14.925 -0.928 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.086 0.914 9 C -0.005 4.005 10 C -0.067 4.067 11 H 0.099 0.901 12 C -0.199 4.199 13 S 0.096 5.904 14 C -0.185 4.185 15 C -0.123 4.123 16 C -0.082 4.082 17 C -0.177 4.177 18 C 0.071 3.929 19 F -0.130 7.130 20 C -0.158 4.158 21 H 0.071 0.929 22 H 0.004 0.996 23 H 0.032 0.968 24 H 0.107 0.893 25 H 0.141 0.859 26 H 0.180 0.820 27 H 0.206 0.794 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.767 -15.303 -1.613 15.842 hybrid contribution -1.023 2.246 0.945 2.643 sum 2.744 -13.057 -0.668 13.359 Atomic orbital electron populations 1.70128 1.07952 1.27652 1.51611 1.25957 0.95639 1.03303 0.94737 0.85410 0.79295 0.78831 0.77596 1.18137 1.20485 1.20764 1.21617 0.93587 0.91532 1.50489 0.91430 1.19162 0.93621 0.91715 0.95981 1.20554 0.96809 0.91921 0.97397 0.90093 1.24271 1.03863 0.92345 0.99403 1.85510 1.31169 1.06517 1.67239 1.22232 0.99050 0.97115 1.00140 1.20914 0.96230 0.94317 1.00804 1.21419 0.94225 0.99793 0.92808 1.21346 1.02521 0.90514 1.03317 1.18141 0.94305 0.86653 0.93776 1.91455 1.86490 1.61098 1.73931 1.21220 0.97978 0.96658 0.99898 0.92854 0.99597 0.96780 0.89278 0.85893 0.82005 0.79420 0.82103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.29 21.45 0.28 -57.25 15 2 C 0.00 0.09 5.46 84.66 0.46 0.55 15 3 Si 0.96 44.20 29.54 68.60 2.03 46.22 15 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.28 -12.75 7.11 99.48 0.71 -12.05 15 7 C -0.53 -29.95 8.58 25.60 0.22 -29.73 15 8 H 0.07 3.55 7.58 -2.91 -0.02 3.53 15 9 C 0.03 1.79 4.07 29.85 0.12 1.91 15 10 C -0.05 -2.05 2.55 -11.10 -0.03 -2.08 15 11 H 0.08 3.54 8.14 -2.39 -0.02 3.52 15 12 C -0.05 -1.91 6.33 72.37 0.46 -1.46 15 13 S -0.15 -4.70 23.08 -56.49 -1.30 -6.01 15 14 C -0.07 -2.36 6.48 22.56 0.15 -2.22 15 15 C -0.10 -2.36 10.05 22.37 0.22 -2.14 15 16 C -0.06 -1.28 10.08 22.23 0.22 -1.05 15 17 C -0.16 -4.17 9.96 22.21 0.22 -3.95 15 18 C 0.09 3.46 7.13 22.58 0.16 3.62 15 19 F -0.15 -6.71 14.62 44.97 0.66 -6.05 15 20 C -0.15 -5.91 5.57 -19.28 -0.11 -6.02 15 21 H 0.26 15.20 8.31 -92.72 -0.77 14.43 15 22 H -0.01 -0.85 8.07 -2.39 -0.02 -0.87 15 23 H 0.01 0.83 5.63 -2.39 -0.01 0.81 15 24 H 0.09 3.54 7.88 -2.39 -0.02 3.52 15 25 H 0.12 4.23 8.14 -2.39 -0.02 4.21 15 26 H 0.16 2.79 8.06 -2.91 -0.02 2.76 15 27 H 0.19 1.91 8.06 -2.91 -0.02 1.89 15 28 H 0.16 3.38 8.06 -2.91 -0.02 3.35 15 Total: -1.00 -67.66 256.03 4.94 -62.72 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.17 Total: 2.92 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 2.10 Total: -42.56 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.28 Total: -57.25 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.66 Total: -6.05 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -1.30 Total: -6.01 kcal Total: -67.66 4.94 -62.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246712.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.291 kcal (2) G-P(sol) polarization free energy of solvation -67.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds