Wall clock time and date at job start Mon Mar 30 2020 05:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48500 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46754 * 299.99620 * 3 2 1 6 6 H 1.48495 * 109.47439 * 59.99113 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00414 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47165 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.20495 * 304.49146 * 10 9 7 12 12 C 1.54146 * 109.27668 * 63.97651 * 10 9 7 13 13 S 1.83305 * 101.07235 * 148.58731 * 12 10 9 14 14 C 1.77443 * 96.60840 * 335.16237 * 13 12 10 15 15 C 1.38838 * 130.55309 * 195.27855 * 14 13 12 16 16 C 1.38038 * 120.21500 * 179.70176 * 15 14 13 17 17 C 1.38283 * 119.31977 * 359.97438 * 16 15 14 18 18 C 1.37935 * 120.51170 * 0.09841 * 17 16 15 19 19 F 1.35095 * 119.49597 * 180.28045 * 18 17 16 20 20 C 1.38842 * 108.28175 * 15.19042 * 14 13 12 21 21 H 0.96995 * 120.00467 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47187 * 59.99958 * 9 7 2 23 23 H 1.09000 * 109.47539 * 300.00063 * 9 7 2 24 24 H 1.08996 * 111.10304 * 30.63975 * 12 10 9 25 25 H 1.08997 * 111.10529 * 266.53834 * 12 10 9 26 26 H 1.08003 * 119.89597 * 359.67071 * 15 14 13 27 27 H 1.08001 * 120.33522 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.74057 * 180.10470 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9214 -3.5558 -0.8478 12 6 3.0613 -3.6340 1.3081 13 16 3.3799 -5.4211 1.5626 14 6 1.9813 -6.0108 0.6435 15 6 1.3866 -7.2650 0.6105 16 6 0.2851 -7.4906 -0.1902 17 6 -0.2183 -6.4556 -0.9567 18 6 0.3727 -5.2096 -0.9258 19 9 -0.1395 -4.2116 -1.6786 20 6 1.4908 -4.9626 -0.1236 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.4747 -3.2194 2.1278 25 1 3.9931 -3.0839 1.1774 26 1 1.7875 -8.0668 1.2129 27 1 -0.1793 -8.4653 -0.2171 28 1 -1.0809 -6.6241 -1.5843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260246717.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:22 Heat of formation + Delta-G solvation = -29.377691 kcal Electronic energy + Delta-G solvation = -14475.572710 eV Core-core repulsion = 11917.555738 eV Total energy + Delta-G solvation = -2558.016972 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.43077 -38.94918 -35.45114 -32.54844 -30.32654 -29.48770 -27.27822 -24.36309 -22.54437 -22.13318 -19.86280 -17.82023 -16.59048 -16.05856 -15.42974 -15.35451 -15.06785 -14.59077 -14.12677 -13.92192 -12.98518 -12.49671 -12.41162 -12.18066 -12.05988 -11.85585 -11.45505 -11.02746 -10.74907 -10.61499 -10.37440 -9.98091 -9.61391 -9.20895 -9.11786 -8.40296 -8.30383 -7.19620 -6.05490 -4.09202 1.25251 1.36948 1.91605 2.57893 3.27595 3.35600 3.38388 3.68810 4.40152 4.58182 4.85943 4.98280 5.16028 5.30758 5.42427 5.50851 5.59508 5.75405 6.09483 6.20402 6.28277 6.37387 6.42406 6.46161 6.71069 7.05901 7.57600 7.67575 7.91321 8.29271 8.96302 9.54959 11.05495 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031017 B = 0.008106 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.512259 B = 3453.399751 C = 4222.984947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.054 4.054 11 H 0.090 0.910 12 C -0.046 4.046 13 S -0.182 6.182 14 C -0.056 4.056 15 C -0.107 4.107 16 C -0.087 4.087 17 C -0.164 4.164 18 C 0.131 3.869 19 F -0.124 7.124 20 C -0.116 4.116 21 H 0.261 0.739 22 H 0.043 0.957 23 H 0.019 0.981 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 -12.746 0.459 12.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.016 4.016 10 C -0.073 4.073 11 H 0.108 0.892 12 C -0.194 4.194 13 S 0.062 5.938 14 C -0.168 4.168 15 C -0.131 4.131 16 C -0.107 4.107 17 C -0.185 4.185 18 C 0.110 3.890 19 F -0.102 7.102 20 C -0.122 4.122 21 H 0.071 0.929 22 H 0.061 0.939 23 H 0.037 0.963 24 H 0.121 0.879 25 H 0.131 0.869 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.926 -13.109 1.148 13.480 hybrid contribution -0.699 1.728 -0.797 2.027 sum 2.228 -11.381 0.350 11.603 Atomic orbital electron populations 1.69977 1.06069 1.26627 1.50203 1.24996 0.94802 0.99227 0.95144 0.86551 0.80095 0.83822 0.77639 1.19684 1.20972 1.21003 1.21188 0.92933 0.90647 1.51359 0.92443 1.19424 0.93325 0.89761 0.99088 1.20776 0.97755 0.92367 0.96414 0.89159 1.24447 1.04015 0.89730 1.01160 1.85757 1.31384 1.09398 1.67311 1.21934 0.98507 0.96251 1.00141 1.20376 0.96663 0.95013 1.01094 1.20800 0.95681 0.98543 0.95628 1.20932 1.02333 0.91896 1.03370 1.17574 0.93136 0.85453 0.92879 1.91527 1.85790 1.59346 1.73574 1.21329 0.96647 0.96706 0.97540 0.92932 0.93871 0.96262 0.87866 0.86929 0.85444 0.84675 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.52 -14.16 8.58 -34.44 -0.30 -14.46 15 8 H 0.06 1.49 7.58 -52.49 -0.40 1.09 15 9 C 0.02 0.56 4.07 -27.88 -0.11 0.44 15 10 C -0.05 -1.11 2.55 -91.09 -0.23 -1.35 15 11 H 0.09 1.87 8.14 -51.93 -0.42 1.45 15 12 C -0.05 -0.85 6.33 37.76 0.24 -0.61 15 13 S -0.18 -3.02 23.08 -107.50 -2.48 -5.50 15 14 C -0.06 -0.95 6.48 -39.14 -0.25 -1.20 15 15 C -0.11 -1.50 10.05 -39.43 -0.40 -1.90 15 16 C -0.09 -1.08 10.08 -39.64 -0.40 -1.48 15 17 C -0.16 -2.39 9.96 -39.68 -0.40 -2.78 15 18 C 0.13 2.42 7.13 -39.10 -0.28 2.14 15 19 F -0.12 -2.59 14.60 2.25 0.03 -2.56 15 20 C -0.12 -2.22 5.57 -103.72 -0.58 -2.80 15 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 22 H 0.04 1.18 5.62 -51.93 -0.29 0.89 15 23 H 0.02 0.52 8.07 -51.93 -0.42 0.10 15 24 H 0.10 1.97 7.88 -51.93 -0.41 1.56 15 25 H 0.11 1.92 8.14 -51.93 -0.42 1.50 15 26 H 0.13 1.46 8.06 -52.48 -0.42 1.04 15 27 H 0.14 1.18 8.06 -52.49 -0.42 0.76 15 28 H 0.14 1.62 8.06 -52.49 -0.42 1.19 15 LS Contribution 256.01 15.07 3.86 3.86 Total: -1.00 -29.64 256.01 -8.44 -38.08 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -2.77 Total: -2.00 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -2.80 Total: -22.40 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.03 Total: -2.56 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.48 Total: -5.50 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.64 -8.44 -38.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246717.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.703 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds