Wall clock time and date at job start Mon Mar 30 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48500 * 109.47147 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46754 * 299.99620 * 3 2 1 6 6 H 1.48495 * 109.47439 * 59.99113 * 3 2 1 7 7 C 1.37875 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00414 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47165 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.20495 * 304.49146 * 10 9 7 12 12 C 1.54146 * 109.27668 * 63.97651 * 10 9 7 13 13 S 1.83305 * 101.07235 * 148.58731 * 12 10 9 14 14 C 1.77443 * 96.60840 * 335.16237 * 13 12 10 15 15 C 1.38838 * 130.55309 * 195.27855 * 14 13 12 16 16 C 1.38038 * 120.21500 * 179.70176 * 15 14 13 17 17 C 1.38283 * 119.31977 * 359.97438 * 16 15 14 18 18 C 1.37935 * 120.51170 * 0.09841 * 17 16 15 19 19 F 1.35095 * 119.49597 * 180.28045 * 18 17 16 20 20 C 1.38842 * 108.28175 * 15.19042 * 14 13 12 21 21 H 0.96995 * 120.00467 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47187 * 59.99958 * 9 7 2 23 23 H 1.09000 * 109.47539 * 300.00063 * 9 7 2 24 24 H 1.08996 * 111.10304 * 30.63975 * 12 10 9 25 25 H 1.08997 * 111.10529 * 266.53834 * 12 10 9 26 26 H 1.08003 * 119.89597 * 359.67071 * 15 14 13 27 27 H 1.08001 * 120.33522 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.74057 * 180.10470 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2123 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9214 -3.5558 -0.8478 12 6 3.0613 -3.6340 1.3081 13 16 3.3799 -5.4211 1.5626 14 6 1.9813 -6.0108 0.6435 15 6 1.3866 -7.2650 0.6105 16 6 0.2851 -7.4906 -0.1902 17 6 -0.2183 -6.4556 -0.9567 18 6 0.3727 -5.2096 -0.9258 19 9 -0.1395 -4.2116 -1.6786 20 6 1.4908 -4.9626 -0.1236 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 2.4747 -3.2194 2.1278 25 1 3.9931 -3.0839 1.1774 26 1 1.7875 -8.0668 1.2129 27 1 -0.1793 -8.4653 -0.2171 28 1 -1.0809 -6.6241 -1.5843 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260246717.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:21 Heat of formation + Delta-G solvation = -45.379877 kcal Electronic energy + Delta-G solvation = -14476.266616 eV Core-core repulsion = 11917.555738 eV Total energy + Delta-G solvation = -2558.710878 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.91494 -40.23554 -37.04491 -34.55191 -31.63073 -30.89760 -29.08044 -26.13553 -23.85954 -23.65223 -21.45655 -19.17580 -18.58031 -17.44215 -16.86976 -16.74830 -16.53480 -16.41073 -15.67218 -15.23756 -14.47936 -14.23320 -14.02472 -13.77972 -13.48037 -13.23786 -13.00381 -12.82671 -12.44003 -12.30143 -12.06669 -11.73062 -11.15264 -11.07826 -10.65314 -10.55761 -9.62304 -8.49392 -8.20880 -6.32306 0.02406 0.12513 0.59917 1.17150 1.39172 1.39725 1.52432 2.38883 2.49226 3.12928 3.31759 3.49661 3.74290 3.96018 4.02567 4.18453 4.33606 4.49811 4.68001 4.76899 4.88498 5.04777 5.11149 5.17767 5.28189 5.43888 5.57976 5.78177 5.85029 6.16728 6.82858 7.36624 8.91335 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031017 B = 0.008106 C = 0.006629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.512259 B = 3453.399751 C = 4222.984947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.068 0.932 9 C 0.033 3.967 10 C -0.047 4.047 11 H 0.081 0.919 12 C -0.051 4.051 13 S -0.147 6.147 14 C -0.073 4.073 15 C -0.099 4.099 16 C -0.063 4.063 17 C -0.156 4.156 18 C 0.092 3.908 19 F -0.151 7.151 20 C -0.151 4.151 21 H 0.263 0.737 22 H 0.014 0.986 23 H -0.014 1.014 24 H 0.089 0.911 25 H 0.123 0.877 26 H 0.162 0.838 27 H 0.189 0.811 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -14.932 0.903 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.181 1.181 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.086 0.914 9 C -0.005 4.005 10 C -0.067 4.067 11 H 0.099 0.901 12 C -0.199 4.199 13 S 0.096 5.904 14 C -0.185 4.185 15 C -0.123 4.123 16 C -0.082 4.082 17 C -0.177 4.177 18 C 0.071 3.929 19 F -0.130 7.130 20 C -0.158 4.158 21 H 0.071 0.929 22 H 0.032 0.968 23 H 0.004 0.996 24 H 0.107 0.893 25 H 0.141 0.859 26 H 0.180 0.820 27 H 0.206 0.794 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.774 -15.310 1.591 15.848 hybrid contribution -1.024 2.246 -0.942 2.642 sum 2.750 -13.063 0.649 13.365 Atomic orbital electron populations 1.70126 1.07951 1.27652 1.51614 1.25953 0.95637 1.03299 0.94740 0.85412 0.79296 0.78839 0.77595 1.18138 1.20753 1.20498 1.21616 0.93587 0.91535 1.50485 0.91431 1.19167 0.93621 0.91712 0.95995 1.20555 0.96814 0.91925 0.97388 0.90086 1.24272 1.03867 0.92339 0.99403 1.85510 1.31264 1.06518 1.67144 1.22229 0.99053 0.97100 1.00153 1.20916 0.96294 0.94301 1.00757 1.21419 0.94200 0.99777 0.92846 1.21347 1.02476 0.90514 1.03362 1.18140 0.94228 0.86593 0.93917 1.91452 1.86240 1.60854 1.74417 1.21220 0.98033 0.96650 0.99857 0.92854 0.96756 0.99602 0.89284 0.85892 0.82006 0.79421 0.82104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.29 21.45 0.28 -57.25 15 2 C 0.00 0.09 5.46 84.65 0.46 0.55 15 3 Si 0.96 44.20 29.54 68.60 2.03 46.22 15 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 7 C -0.53 -29.95 8.58 25.60 0.22 -29.73 15 8 H 0.07 3.55 7.58 -2.91 -0.02 3.53 15 9 C 0.03 1.78 4.07 29.85 0.12 1.91 15 10 C -0.05 -2.05 2.55 -11.10 -0.03 -2.08 15 11 H 0.08 3.54 8.14 -2.39 -0.02 3.52 15 12 C -0.05 -1.91 6.33 72.37 0.46 -1.46 15 13 S -0.15 -4.70 23.08 -56.49 -1.30 -6.01 15 14 C -0.07 -2.36 6.48 22.56 0.15 -2.22 15 15 C -0.10 -2.36 10.05 22.37 0.22 -2.14 15 16 C -0.06 -1.27 10.08 22.23 0.22 -1.05 15 17 C -0.16 -4.17 9.96 22.21 0.22 -3.95 15 18 C 0.09 3.46 7.13 22.58 0.16 3.62 15 19 F -0.15 -6.71 14.60 44.97 0.66 -6.05 15 20 C -0.15 -5.91 5.57 -19.28 -0.11 -6.02 15 21 H 0.26 15.20 8.31 -92.71 -0.77 14.43 15 22 H 0.01 0.84 5.62 -2.39 -0.01 0.83 15 23 H -0.01 -0.86 8.07 -2.39 -0.02 -0.87 15 24 H 0.09 3.54 7.88 -2.39 -0.02 3.52 15 25 H 0.12 4.23 8.14 -2.39 -0.02 4.21 15 26 H 0.16 2.79 8.06 -2.91 -0.02 2.76 15 27 H 0.19 1.91 8.06 -2.91 -0.02 1.89 15 28 H 0.16 3.38 8.06 -2.91 -0.02 3.35 15 Total: -1.00 -67.66 256.01 4.93 -62.72 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.17 Total: 2.92 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 2.10 Total: -42.56 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.28 Total: -57.25 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.66 Total: -6.05 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -4.70 SS G_CDS: -1.30 Total: -6.01 kcal Total: -67.66 4.93 -62.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246717.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.343 kcal (2) G-P(sol) polarization free energy of solvation -67.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds