Wall clock time and date at job start Mon Mar 30 2020 05:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00090 * 2 1 4 4 H 1.48495 * 109.47030 * 270.00084 * 3 2 1 5 5 H 1.48500 * 109.47131 * 29.99709 * 3 2 1 6 6 H 1.48499 * 109.47021 * 149.99794 * 3 2 1 7 7 C 1.37879 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99592 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47172 * 180.02562 * 9 7 2 11 11 C 1.37746 * 120.01805 * 89.99991 * 10 9 7 12 12 C 1.38870 * 120.79981 * 179.59569 * 11 10 9 13 13 C 1.39281 * 118.89776 * 0.59412 * 12 11 10 14 14 C 1.37924 * 120.25720 * 359.58629 * 13 12 11 15 15 C 1.38389 * 120.33830 * 0.02947 * 14 13 12 16 16 Cl 1.73599 * 120.13145 * 180.16709 * 15 14 13 17 17 O 1.36165 * 111.22767 * 180.64475 * 12 11 10 18 18 C 1.43778 * 109.23376 * 340.96352 * 17 12 11 19 19 C 1.51640 * 132.15009 * 359.01954 * 11 10 9 20 20 H 0.97005 * 120.00032 * 0.02562 * 1 2 3 21 21 H 1.09005 * 109.47099 * 60.00419 * 9 7 2 22 22 H 1.09000 * 109.47675 * 300.00705 * 9 7 2 23 23 H 1.07997 * 119.86914 * 179.59063 * 13 12 11 24 24 H 1.08001 * 119.83376 * 180.02562 * 14 13 12 25 25 H 1.08995 * 110.74745 * 146.07791 * 18 17 12 26 26 H 1.09007 * 110.74595 * 269.43033 * 18 17 12 27 27 H 1.09001 * 110.93960 * 314.05030 * 19 11 10 28 28 H 1.08997 * 110.93947 * 77.69838 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6780 -4.1684 1.1922 12 6 3.5739 -5.2293 1.2111 13 6 4.0253 -5.7508 0.0011 14 6 3.5791 -5.2233 -1.1926 15 6 2.6800 -4.1712 -1.1993 16 17 2.1187 -3.5142 -2.7050 17 8 3.8733 -5.5990 2.4870 18 6 3.5372 -4.5255 3.3824 19 6 2.3910 -3.8030 2.6356 20 1 -0.4850 0.8401 -0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6245 -2.5571 0.8896 23 1 4.7272 -6.5715 -0.0025 24 1 3.9332 -5.6332 -2.1270 25 1 3.1895 -4.9152 4.3391 26 1 4.3879 -3.8584 3.5221 27 1 2.4487 -2.7246 2.7834 28 1 1.4195 -4.1856 2.9485 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260257936.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:56 Heat of formation + Delta-G solvation = -25.431579 kcal Electronic energy + Delta-G solvation = -14549.415106 eV Core-core repulsion = 11977.152755 eV Total energy + Delta-G solvation = -2572.262351 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.68840 -37.43116 -35.43598 -33.62685 -32.15536 -30.33132 -28.91740 -26.89874 -23.57691 -22.73812 -21.51588 -20.14319 -16.74954 -16.46461 -16.31801 -15.88671 -15.41953 -14.53265 -13.59223 -13.26779 -12.97922 -12.66069 -12.40560 -12.04827 -11.94204 -11.41694 -11.30462 -11.13489 -11.04631 -10.67316 -10.49772 -10.14306 -10.00590 -9.58155 -9.40218 -8.42601 -8.06778 -7.54294 -6.05743 -4.08695 1.64684 1.84401 2.89458 3.29255 3.35709 3.38774 3.58386 4.09145 4.43950 4.87499 5.02156 5.28971 5.29660 5.32972 5.51571 5.58003 5.71076 6.03119 6.14252 6.32931 6.40610 6.50665 6.74106 6.81912 6.98582 7.46320 7.54617 7.70032 7.89165 8.26727 8.94454 9.54235 11.04512 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021311 B = 0.010015 C = 0.007565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.572737 B = 2795.111658 C = 3700.365919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.503 4.503 8 H 0.055 0.945 9 C 0.046 3.954 10 C 0.018 3.982 11 C -0.162 4.162 12 C 0.100 3.900 13 C -0.155 4.155 14 C -0.082 4.082 15 C -0.066 4.066 16 Cl -0.065 7.065 17 O -0.311 6.311 18 C 0.052 3.948 19 C -0.104 4.104 20 H 0.262 0.738 21 H 0.043 0.957 22 H 0.030 0.970 23 H 0.126 0.874 24 H 0.132 0.868 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -8.866 2.257 10.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.009 3.991 10 C 0.018 3.982 11 C -0.163 4.163 12 C 0.055 3.945 13 C -0.174 4.174 14 C -0.101 4.101 15 C -0.092 4.092 16 Cl -0.036 7.036 17 O -0.226 6.226 18 C -0.023 4.023 19 C -0.141 4.141 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.048 0.952 23 H 0.144 0.856 24 H 0.149 0.851 25 H 0.119 0.881 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.555 -8.884 2.225 10.712 hybrid contribution 0.348 1.173 -0.113 1.228 sum 5.903 -7.712 2.112 9.939 Atomic orbital electron populations 1.69949 1.05968 1.26773 1.50419 1.24940 0.94820 0.99028 0.95194 0.86583 0.79804 0.83335 0.78290 1.20520 1.21189 1.19868 1.20867 0.92783 0.89406 1.51076 0.92659 1.18443 0.92459 0.89035 0.99170 1.19795 0.95235 0.94538 0.88676 1.20413 1.01088 0.99631 0.95195 1.19611 0.94651 0.94801 0.85451 1.19859 1.04818 1.04263 0.88425 1.20616 0.96514 0.95373 0.97576 1.20570 1.02405 0.98779 0.87477 1.98328 1.88569 1.85895 1.30807 1.86751 1.82293 1.39532 1.13984 1.23838 0.97522 0.87836 0.93125 1.21698 0.98732 1.03144 0.90541 0.92846 0.93917 0.95153 0.85624 0.85050 0.88089 0.90784 0.87999 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.34 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.50 -13.70 9.09 -34.44 -0.31 -14.02 15 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 15 9 C 0.05 1.15 4.61 -29.04 -0.13 1.02 15 10 C 0.02 0.40 5.06 -104.72 -0.53 -0.13 15 11 C -0.16 -3.19 6.07 -104.10 -0.63 -3.82 15 12 C 0.10 1.79 7.04 -38.96 -0.27 1.52 15 13 C -0.15 -2.52 10.06 -39.31 -0.40 -2.92 15 14 C -0.08 -1.37 9.81 -39.64 -0.39 -1.76 15 15 C -0.07 -1.31 6.32 -39.45 -0.25 -1.56 15 16 Cl -0.06 -1.28 27.32 -51.86 -1.42 -2.70 15 17 O -0.31 -5.14 11.11 -20.26 -0.23 -5.37 15 18 C 0.05 0.71 8.01 38.05 0.30 1.02 15 19 C -0.10 -1.73 6.64 -26.52 -0.18 -1.91 15 20 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 21 H 0.04 1.15 6.92 -51.93 -0.36 0.79 15 22 H 0.03 0.80 7.79 -51.93 -0.40 0.39 15 23 H 0.13 1.69 8.06 -52.49 -0.42 1.26 15 24 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 25 H 0.10 1.07 8.14 -51.93 -0.42 0.64 15 26 H 0.07 0.94 8.14 -51.92 -0.42 0.52 15 27 H 0.10 1.79 8.14 -51.93 -0.42 1.36 15 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 LS Contribution 260.17 15.07 3.92 3.92 Total: -1.00 -29.59 260.17 -7.73 -37.32 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: -2.84 Total: -3.40 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.89 Total: -20.94 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.74 Total: -25.12 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.23 Total: -5.37 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -1.42 Total: -2.70 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.59 -7.73 -37.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260257936.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.886 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds