Wall clock time and date at job start Mon Mar 30 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48503 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46893 * 299.99638 * 3 2 1 6 6 H 1.48503 * 109.47306 * 59.99324 * 3 2 1 7 7 C 1.37875 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00519 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47422 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.21031 * 55.49973 * 10 9 7 12 12 C 1.54146 * 109.28756 * 295.99806 * 10 9 7 13 13 S 1.83300 * 101.06811 * 268.15263 * 12 10 9 14 14 C 1.77441 * 96.61700 * 335.18546 * 13 12 10 15 15 C 1.38803 * 130.52672 * 195.29196 * 14 13 12 16 16 C 1.38040 * 120.19491 * 179.36236 * 15 14 13 17 17 C 1.38492 * 119.27053 * 359.78786 * 16 15 14 18 18 F 1.35098 * 119.75920 * 180.40139 * 17 16 15 19 19 C 1.37877 * 120.48584 * 0.62171 * 17 16 15 20 20 C 1.38855 * 108.29233 * 15.01425 * 14 13 12 21 21 H 0.96995 * 120.00239 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47423 * 59.99838 * 9 7 2 23 23 H 1.09002 * 109.47299 * 299.99703 * 9 7 2 24 24 H 1.08995 * 111.10585 * 150.20443 * 12 10 9 25 25 H 1.09004 * 111.13671 * 26.11514 * 12 10 9 26 26 H 1.08003 * 119.89862 * 359.38597 * 15 14 13 27 27 H 1.08002 * 120.36175 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.48576 * 179.78895 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9215 -3.5558 0.8488 12 6 3.0609 -3.6346 -1.3072 13 16 2.0480 -4.7256 -2.3766 14 6 1.2879 -5.6486 -1.0656 15 6 0.5941 -6.8505 -1.0932 16 6 0.0959 -7.3915 0.0749 17 6 0.3002 -6.7244 1.2712 18 9 -0.1760 -7.2491 2.4214 19 6 0.9822 -5.5264 1.2965 20 6 1.4908 -4.9628 0.1247 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 4.0579 -4.0486 -1.1567 25 1 3.1152 -2.6254 -1.7155 26 1 0.4440 -7.3640 -2.0314 27 1 -0.4447 -8.3264 0.0564 28 1 1.1294 -5.0182 2.2380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260262989.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:38 Heat of formation + Delta-G solvation = -32.757514 kcal Electronic energy + Delta-G solvation = -14204.597629 eV Core-core repulsion = 11646.434098 eV Total energy + Delta-G solvation = -2558.163532 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.70746 -39.09028 -35.35132 -32.53074 -30.45314 -29.54429 -27.20309 -24.31869 -22.79248 -22.17946 -19.83501 -17.56020 -16.60273 -16.44880 -16.08211 -15.41411 -14.74266 -14.56726 -14.07902 -13.63044 -13.36358 -12.96362 -12.54000 -12.18208 -11.94687 -11.79739 -11.20468 -11.09268 -10.85068 -10.61447 -10.41848 -9.80817 -9.65961 -9.25851 -9.16912 -8.62009 -8.46112 -6.97363 -6.10009 -4.14445 1.23926 1.37735 1.99729 2.68465 3.25090 3.33381 3.35542 3.67480 4.34335 4.39578 4.80041 4.99505 5.24541 5.27670 5.31996 5.53912 5.56852 5.85912 5.99318 6.18454 6.22617 6.27800 6.42475 6.54409 6.67835 7.00767 7.51573 7.61663 7.86434 8.23440 8.90926 9.50224 11.00841 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.007223 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.379344 B = 3875.757998 C = 4475.793365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.035 3.965 10 C -0.059 4.059 11 H 0.088 0.912 12 C -0.063 4.063 13 S -0.158 6.158 14 C -0.092 4.092 15 C -0.066 4.066 16 C -0.149 4.149 17 C 0.092 3.908 18 F -0.144 7.144 19 C -0.131 4.131 20 C -0.046 4.046 21 H 0.262 0.738 22 H 0.030 0.970 23 H 0.023 0.977 24 H 0.084 0.916 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 -11.799 -0.831 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.078 4.078 11 H 0.106 0.894 12 C -0.211 4.211 13 S 0.085 5.915 14 C -0.204 4.204 15 C -0.090 4.090 16 C -0.170 4.170 17 C 0.071 3.929 18 F -0.122 7.122 19 C -0.152 4.152 20 C -0.052 4.052 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.041 0.959 24 H 0.102 0.898 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.156 0.844 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.846 -11.655 -2.148 12.188 hybrid contribution 0.270 0.911 1.605 1.865 sum 3.116 -10.744 -0.543 11.200 Atomic orbital electron populations 1.69974 1.06102 1.26753 1.49909 1.24998 0.94805 0.99259 0.95020 0.86543 0.80074 0.83753 0.77697 1.19648 1.20923 1.20974 1.21179 0.92983 0.90510 1.51712 0.92257 1.19178 0.93169 0.89323 0.98498 1.20854 0.97851 0.92323 0.96820 0.89409 1.24521 0.98386 1.02533 0.95658 1.85771 1.53118 1.40366 1.12270 1.22167 1.03775 0.97981 0.96507 1.20159 0.97451 0.93330 0.98032 1.20916 1.03589 1.01472 0.91006 1.17350 0.99564 0.94196 0.81809 1.91472 1.86504 1.86221 1.48041 1.20755 1.00254 0.94845 0.99359 1.21091 0.97241 0.94942 0.91912 0.92843 0.95210 0.95910 0.89767 0.85054 0.84991 0.84440 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.18 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 7 C -0.53 -13.78 8.02 -34.44 -0.28 -14.05 15 8 H 0.06 1.48 7.43 -52.49 -0.39 1.09 15 9 C 0.04 0.87 4.38 -27.88 -0.12 0.74 15 10 C -0.06 -1.15 2.55 -91.08 -0.23 -1.39 15 11 H 0.09 1.64 8.14 -51.93 -0.42 1.22 15 12 C -0.06 -1.11 6.82 37.76 0.26 -0.86 15 13 S -0.16 -2.76 23.02 -107.50 -2.47 -5.24 15 14 C -0.09 -1.58 6.48 -39.14 -0.25 -1.84 15 15 C -0.07 -0.95 10.05 -39.45 -0.40 -1.35 15 16 C -0.15 -2.05 10.06 -39.56 -0.40 -2.45 15 17 C 0.09 1.44 7.26 -39.62 -0.29 1.15 15 18 F -0.14 -2.20 17.25 2.25 0.04 -2.16 15 19 C -0.13 -2.23 9.95 -39.20 -0.39 -2.62 15 20 C -0.05 -0.85 5.22 -103.79 -0.54 -1.39 15 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 22 H 0.03 0.80 8.10 -51.93 -0.42 0.38 15 23 H 0.02 0.60 8.14 -51.93 -0.42 0.18 15 24 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 25 H 0.13 2.48 6.83 -51.93 -0.35 2.13 15 26 H 0.13 1.58 8.06 -52.48 -0.42 1.16 15 27 H 0.14 1.47 8.06 -52.49 -0.42 1.05 15 28 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 LS Contribution 259.93 15.07 3.92 3.92 Total: -1.00 -28.49 259.93 -8.38 -36.87 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -2.84 Total: -1.48 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -2.74 Total: -22.47 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.74 Total: -25.18 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.47 Total: -5.24 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.49 -8.38 -36.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262989.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.115 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds