Wall clock time and date at job start Mon Mar 30 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00026 * 2 1 4 4 H 1.48503 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46893 * 299.99638 * 3 2 1 6 6 H 1.48503 * 109.47306 * 59.99324 * 3 2 1 7 7 C 1.37875 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00519 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00064 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47422 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.21031 * 55.49973 * 10 9 7 12 12 C 1.54146 * 109.28756 * 295.99806 * 10 9 7 13 13 S 1.83300 * 101.06811 * 268.15263 * 12 10 9 14 14 C 1.77441 * 96.61700 * 335.18546 * 13 12 10 15 15 C 1.38803 * 130.52672 * 195.29196 * 14 13 12 16 16 C 1.38040 * 120.19491 * 179.36236 * 15 14 13 17 17 C 1.38492 * 119.27053 * 359.78786 * 16 15 14 18 18 F 1.35098 * 119.75920 * 180.40139 * 17 16 15 19 19 C 1.37877 * 120.48584 * 0.62171 * 17 16 15 20 20 C 1.38855 * 108.29233 * 15.01425 * 14 13 12 21 21 H 0.96995 * 120.00239 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.47423 * 59.99838 * 9 7 2 23 23 H 1.09002 * 109.47299 * 299.99703 * 9 7 2 24 24 H 1.08995 * 111.10585 * 150.20443 * 12 10 9 25 25 H 1.09004 * 111.13671 * 26.11514 * 12 10 9 26 26 H 1.08003 * 119.89862 * 359.38597 * 15 14 13 27 27 H 1.08002 * 120.36175 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.48576 * 179.78895 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9215 -3.5558 0.8488 12 6 3.0609 -3.6346 -1.3072 13 16 2.0480 -4.7256 -2.3766 14 6 1.2879 -5.6486 -1.0656 15 6 0.5941 -6.8505 -1.0932 16 6 0.0959 -7.3915 0.0749 17 6 0.3002 -6.7244 1.2712 18 9 -0.1760 -7.2491 2.4214 19 6 0.9822 -5.5264 1.2965 20 6 1.4908 -4.9628 0.1247 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5568 0.8903 24 1 4.0579 -4.0486 -1.1567 25 1 3.1152 -2.6254 -1.7155 26 1 0.4440 -7.3640 -2.0314 27 1 -0.4447 -8.3264 0.0564 28 1 1.1294 -5.0182 2.2380 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260262989.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:37 Heat of formation + Delta-G solvation = -47.025079 kcal Electronic energy + Delta-G solvation = -14205.216317 eV Core-core repulsion = 11646.434098 eV Total energy + Delta-G solvation = -2558.782220 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.92630 -40.40356 -36.92127 -34.47979 -31.70572 -31.01692 -28.95385 -26.03689 -24.08958 -23.71308 -21.35985 -18.98575 -18.30556 -17.85206 -17.44296 -16.71353 -16.54271 -15.86363 -15.66356 -14.92815 -14.72380 -14.55659 -14.04170 -13.77736 -13.42484 -13.18336 -12.92613 -12.86870 -12.48080 -12.31551 -12.01165 -11.59879 -11.23092 -11.09259 -10.58058 -10.48329 -9.93162 -8.32735 -8.19561 -6.30836 -0.03186 0.13870 0.65617 1.30915 1.41373 1.42691 1.54514 2.38188 2.44995 3.09871 3.15174 3.56373 3.73802 3.92476 4.06115 4.15366 4.32861 4.50422 4.72056 4.77987 4.91700 4.97197 5.07298 5.10831 5.18535 5.44044 5.59244 5.78692 5.79493 6.17111 6.84419 7.38517 8.92361 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.007223 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.379344 B = 3875.757998 C = 4475.793365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.072 0.928 9 C 0.047 3.953 10 C -0.053 4.053 11 H 0.092 0.908 12 C -0.060 4.060 13 S -0.166 6.166 14 C -0.104 4.104 15 C -0.061 4.061 16 C -0.130 4.130 17 C 0.087 3.913 18 F -0.142 7.142 19 C -0.144 4.144 20 C -0.073 4.073 21 H 0.262 0.738 22 H -0.003 1.003 23 H -0.011 1.011 24 H 0.116 0.884 25 H 0.115 0.885 26 H 0.164 0.836 27 H 0.178 0.822 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 -13.094 -1.184 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.010 3.990 10 C -0.072 4.072 11 H 0.111 0.889 12 C -0.207 4.207 13 S 0.077 5.923 14 C -0.216 4.216 15 C -0.085 4.085 16 C -0.150 4.150 17 C 0.066 3.934 18 F -0.121 7.121 19 C -0.165 4.165 20 C -0.078 4.078 21 H 0.071 0.929 22 H 0.016 0.984 23 H 0.008 0.992 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.181 0.819 27 H 0.195 0.805 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.725 -12.964 -2.496 13.718 hybrid contribution -0.065 1.215 1.742 2.125 sum 3.660 -11.749 -0.754 12.329 Atomic orbital electron populations 1.70119 1.07979 1.27662 1.51615 1.25928 0.95570 1.03241 0.94780 0.85441 0.79443 0.78996 0.77444 1.17926 1.20799 1.20908 1.21616 0.93756 0.91246 1.50350 0.90954 1.18921 0.93445 0.91432 0.95242 1.20646 0.96950 0.91357 0.98230 0.88945 1.24446 0.99706 1.02172 0.94409 1.85694 1.53550 1.40500 1.12577 1.22384 1.04616 0.99052 0.95595 1.20581 0.95943 0.92226 0.99718 1.21342 1.01956 1.02137 0.89577 1.17487 0.99396 0.93907 0.82643 1.91479 1.86404 1.86047 1.48131 1.20852 1.00811 0.95757 0.99069 1.20942 0.98901 0.94975 0.93006 0.92885 0.98448 0.99231 0.86557 0.86643 0.81866 0.80506 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 13.29 21.45 0.28 -55.75 15 2 C 0.00 0.16 5.46 84.65 0.46 0.62 15 3 Si 0.96 42.80 29.54 68.60 2.03 44.82 15 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.53 -28.29 8.02 25.60 0.21 -28.09 15 8 H 0.07 3.57 7.43 -2.91 -0.02 3.55 15 9 C 0.05 2.38 4.38 29.85 0.13 2.51 15 10 C -0.05 -2.07 2.55 -11.09 -0.03 -2.10 15 11 H 0.09 3.47 8.14 -2.39 -0.02 3.45 15 12 C -0.06 -2.07 6.82 72.37 0.49 -1.58 15 13 S -0.17 -5.66 23.02 -56.49 -1.30 -6.96 15 14 C -0.10 -3.45 6.48 22.55 0.15 -3.31 15 15 C -0.06 -1.59 10.05 22.36 0.22 -1.37 15 16 C -0.13 -3.12 10.06 22.28 0.22 -2.90 15 17 C 0.09 2.55 7.26 22.24 0.16 2.71 15 18 F -0.14 -4.07 17.25 44.97 0.78 -3.30 15 19 C -0.14 -4.85 9.95 22.52 0.22 -4.63 15 20 C -0.07 -2.65 5.22 -19.32 -0.10 -2.75 15 21 H 0.26 14.85 8.31 -92.71 -0.77 14.08 15 22 H 0.00 -0.16 8.10 -2.39 -0.02 -0.18 15 23 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 15 24 H 0.12 3.26 8.14 -2.39 -0.02 3.24 15 25 H 0.12 4.36 6.83 -2.38 -0.02 4.35 15 26 H 0.16 3.23 8.06 -2.91 -0.02 3.20 15 27 H 0.18 2.87 8.06 -2.91 -0.02 2.84 15 28 H 0.13 4.35 8.06 -2.91 -0.02 4.33 15 Total: -1.00 -62.29 259.93 5.09 -57.20 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.16 Total: 4.86 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 2.14 Total: -40.87 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.78 Total: -3.30 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -5.66 SS G_CDS: -1.30 Total: -6.96 kcal Total: -62.29 5.09 -57.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262989.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.171 kcal (2) G-P(sol) polarization free energy of solvation -62.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds