Wall clock time and date at job start Mon Mar 30 2020 05:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.25889 * 305.70284 * 10 9 7 12 12 C 1.54137 * 109.27002 * 65.20901 * 10 9 7 13 13 S 1.83295 * 101.08370 * 92.13156 * 12 10 9 14 14 C 1.77440 * 96.59555 * 24.88051 * 13 12 10 15 15 C 1.38795 * 130.52986 * 164.53015 * 14 13 12 16 16 C 1.38046 * 120.19742 * 180.22449 * 15 14 13 17 17 C 1.38501 * 119.26208 * 0.04675 * 16 15 14 18 18 F 1.35106 * 119.75462 * 179.89952 * 17 16 15 19 19 C 1.37869 * 120.48895 * 359.87137 * 17 16 15 20 20 C 1.38678 * 108.24373 * 344.55046 * 14 13 12 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.08996 * 111.09762 * 210.08983 * 12 10 9 25 25 H 1.09004 * 111.09719 * 334.13833 * 12 10 9 26 26 H 1.07999 * 119.90732 * 0.24452 * 15 14 13 27 27 H 1.07998 * 120.36863 * 180.02562 * 16 15 14 28 28 H 1.07996 * 119.48266 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9354 -3.5451 -0.8351 12 6 3.0396 -3.6522 1.3215 13 16 2.0149 -4.7644 2.3571 14 6 1.2818 -5.6707 1.0192 15 6 0.5969 -6.8779 1.0160 16 6 0.1132 -7.3985 -0.1675 17 6 0.3203 -6.7037 -1.3475 18 9 -0.1471 -7.2051 -2.5118 19 6 0.9993 -5.5038 -1.3428 20 6 1.4928 -4.9606 -0.1531 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 4.0408 -4.0594 1.1803 25 1 3.0828 -2.6491 1.7459 26 1 0.4416 -7.4114 1.9421 27 1 -0.4205 -8.3374 -0.1732 28 1 1.1513 -4.9754 -2.2724 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260262992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:40 Heat of formation + Delta-G solvation = -36.534244 kcal Electronic energy + Delta-G solvation = -14239.730624 eV Core-core repulsion = 11681.403321 eV Total energy + Delta-G solvation = -2558.327303 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.77874 -39.19093 -35.52759 -32.71543 -30.53239 -29.52279 -26.94004 -24.16831 -22.85617 -22.29480 -20.08117 -17.62287 -16.83022 -16.66798 -16.24171 -15.47904 -14.73887 -14.42703 -13.83801 -13.70812 -13.60389 -13.16731 -12.63655 -12.20030 -12.00076 -11.80940 -11.52124 -11.08771 -10.77093 -10.52089 -10.27985 -10.07675 -9.77162 -9.28699 -8.86879 -8.56045 -8.41617 -7.06700 -6.44187 -4.15754 1.15444 1.28405 1.91086 2.59791 3.39238 3.40374 3.58381 3.59625 4.28142 4.47774 4.71816 4.91196 5.17636 5.21597 5.33729 5.45178 5.47905 5.77019 5.90955 6.09445 6.13800 6.19034 6.33024 6.44500 6.53041 6.91883 7.21260 7.33953 8.03657 8.34203 8.77058 9.56980 10.95961 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.007265 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.883426 B = 3852.937792 C = 4461.666620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.019 3.981 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.606 4.606 8 H 0.052 0.948 9 C 0.023 3.977 10 C -0.052 4.052 11 H 0.089 0.911 12 C -0.063 4.063 13 S -0.157 6.157 14 C -0.092 4.092 15 C -0.065 4.065 16 C -0.148 4.148 17 C 0.093 3.907 18 F -0.143 7.143 19 C -0.132 4.132 20 C -0.050 4.050 21 H 0.270 0.730 22 H 0.020 0.980 23 H 0.013 0.987 24 H 0.085 0.915 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.139 0.861 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -12.188 0.777 12.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.186 4.186 3 Si 0.895 3.105 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.644 4.644 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.071 4.071 11 H 0.107 0.893 12 C -0.210 4.210 13 S 0.085 5.915 14 C -0.205 4.205 15 C -0.089 4.089 16 C -0.169 4.169 17 C 0.072 3.928 18 F -0.121 7.121 19 C -0.153 4.153 20 C -0.055 4.055 21 H 0.080 0.920 22 H 0.039 0.961 23 H 0.031 0.969 24 H 0.104 0.896 25 H 0.150 0.850 26 H 0.151 0.849 27 H 0.157 0.843 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.184 -10.535 2.094 11.203 hybrid contribution 0.142 -1.743 -1.617 2.382 sum 3.326 -12.278 0.477 12.729 Atomic orbital electron populations 1.70776 1.06944 1.30779 1.45742 1.25824 0.96485 1.02670 0.93591 0.83560 0.74940 0.75415 0.76540 1.20725 1.21343 1.21415 1.21958 0.94190 0.91522 1.56770 0.92961 1.19287 0.93828 0.91134 0.97170 1.20696 0.97704 0.91842 0.96857 0.89294 1.24511 0.98451 1.02320 0.95764 1.85802 1.53745 1.40036 1.11900 1.22126 1.03876 0.97925 0.96527 1.20175 0.97434 0.93348 0.97917 1.20942 1.03546 1.01337 0.91033 1.17355 0.99593 0.94323 0.81557 1.91480 1.86760 1.87127 1.46776 1.20806 1.00343 0.95014 0.99107 1.21097 0.97416 0.95013 0.92015 0.91957 0.96127 0.96889 0.89609 0.85029 0.84885 0.84316 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.20 13.65 55.43 0.76 -26.44 15 2 C 0.02 0.53 5.46 -17.82 -0.10 0.43 15 3 Si 1.07 24.38 29.90 -169.99 -5.08 19.30 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.29 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.61 -16.11 8.04 -34.44 -0.28 -16.39 15 8 H 0.05 1.33 7.51 -52.48 -0.39 0.94 15 9 C 0.02 0.56 3.68 -27.88 -0.10 0.45 15 10 C -0.05 -1.02 2.53 -91.10 -0.23 -1.25 15 11 H 0.09 1.70 8.14 -51.93 -0.42 1.28 15 12 C -0.06 -1.12 6.84 37.75 0.26 -0.86 15 13 S -0.16 -2.75 23.04 -107.50 -2.48 -5.22 15 14 C -0.09 -1.58 6.47 -39.21 -0.25 -1.83 15 15 C -0.06 -0.93 10.05 -39.45 -0.40 -1.32 15 16 C -0.15 -2.00 10.06 -39.55 -0.40 -2.40 15 17 C 0.09 1.44 7.26 -39.62 -0.29 1.15 15 18 F -0.14 -2.16 17.26 2.25 0.04 -2.12 15 19 C -0.13 -2.23 9.95 -39.14 -0.39 -2.62 15 20 C -0.05 -0.91 5.22 -103.80 -0.54 -1.45 15 21 H 0.27 8.13 7.22 -40.82 -0.29 7.84 15 22 H 0.02 0.54 7.98 -51.93 -0.41 0.13 15 23 H 0.01 0.34 8.00 -51.93 -0.42 -0.08 15 24 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.13 2.54 6.91 -51.93 -0.36 2.18 15 26 H 0.13 1.57 8.06 -52.49 -0.42 1.14 15 27 H 0.14 1.45 8.06 -52.49 -0.42 1.03 15 28 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 LS Contribution 258.82 15.07 3.90 3.90 Total: -1.00 -29.05 258.82 -8.37 -37.42 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -2.79 Total: -0.75 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -2.72 Total: -26.08 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.76 Total: -26.44 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.30 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.48 Total: -5.22 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.05 -8.37 -37.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.887 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds