Wall clock time and date at job start Mon Mar 30 2020 05:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.25889 * 305.70284 * 10 9 7 12 12 C 1.54137 * 109.27002 * 65.20901 * 10 9 7 13 13 S 1.83295 * 101.08370 * 92.13156 * 12 10 9 14 14 C 1.77440 * 96.59555 * 24.88051 * 13 12 10 15 15 C 1.38795 * 130.52986 * 164.53015 * 14 13 12 16 16 C 1.38046 * 120.19742 * 180.22449 * 15 14 13 17 17 C 1.38501 * 119.26208 * 0.04675 * 16 15 14 18 18 F 1.35106 * 119.75462 * 179.89952 * 17 16 15 19 19 C 1.37869 * 120.48895 * 359.87137 * 17 16 15 20 20 C 1.38678 * 108.24373 * 344.55046 * 14 13 12 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 23 23 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 24 24 H 1.08996 * 111.09762 * 210.08983 * 12 10 9 25 25 H 1.09004 * 111.09719 * 334.13833 * 12 10 9 26 26 H 1.07999 * 119.90732 * 0.24452 * 15 14 13 27 27 H 1.07998 * 120.36863 * 180.02562 * 16 15 14 28 28 H 1.07996 * 119.48266 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9354 -3.5451 -0.8351 12 6 3.0396 -3.6522 1.3215 13 16 2.0149 -4.7644 2.3571 14 6 1.2818 -5.6707 1.0192 15 6 0.5969 -6.8779 1.0160 16 6 0.1132 -7.3985 -0.1675 17 6 0.3203 -6.7037 -1.3475 18 9 -0.1471 -7.2051 -2.5118 19 6 0.9993 -5.5038 -1.3428 20 6 1.4928 -4.9606 -0.1531 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6241 -2.5566 0.8903 23 1 0.6247 -2.5571 -0.8897 24 1 4.0408 -4.0594 1.1803 25 1 3.0828 -2.6491 1.7459 26 1 0.4416 -7.4114 1.9421 27 1 -0.4205 -8.3374 -0.1732 28 1 1.1513 -4.9754 -2.2724 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260262992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:40 Heat of formation + Delta-G solvation = -51.315902 kcal Electronic energy + Delta-G solvation = -14240.371605 eV Core-core repulsion = 11681.403321 eV Total energy + Delta-G solvation = -2558.968284 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.98711 -40.50522 -37.13901 -34.65617 -31.77624 -30.95938 -28.72142 -25.93392 -24.17556 -23.86821 -21.59450 -19.08248 -18.68890 -17.94557 -17.54131 -16.69986 -16.12388 -15.96188 -15.59916 -15.32824 -14.87256 -14.58813 -14.13380 -13.71949 -13.50025 -13.31893 -13.20994 -12.75253 -12.34628 -12.12747 -12.01842 -11.86225 -11.21273 -10.76043 -10.57873 -10.53097 -10.00278 -8.67407 -8.41640 -6.38996 -0.10898 0.05385 0.56732 1.21623 1.54390 1.62137 1.80355 2.34112 2.57666 3.01795 3.17479 3.48113 3.63488 3.83067 3.98013 4.03288 4.24847 4.39991 4.59317 4.69386 4.81062 4.83902 4.98609 5.00618 5.09048 5.18606 5.37009 5.71232 5.93289 6.17258 6.54322 7.43311 8.72646 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.007265 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.883426 B = 3852.937792 C = 4461.666620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.037 4.037 3 Si 1.115 2.885 4 H -0.289 1.289 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.032 3.968 10 C -0.046 4.046 11 H 0.090 0.910 12 C -0.060 4.060 13 S -0.162 6.162 14 C -0.103 4.103 15 C -0.059 4.059 16 C -0.128 4.128 17 C 0.089 3.911 18 F -0.141 7.141 19 C -0.145 4.145 20 C -0.076 4.076 21 H 0.253 0.747 22 H -0.006 1.006 23 H -0.015 1.015 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.166 0.834 27 H 0.180 0.820 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 -13.670 1.142 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.234 4.234 3 Si 0.937 3.063 4 H -0.215 1.215 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.646 4.646 8 H 0.082 0.918 9 C -0.005 4.005 10 C -0.065 4.065 11 H 0.108 0.892 12 C -0.208 4.208 13 S 0.080 5.920 14 C -0.216 4.216 15 C -0.083 4.083 16 C -0.148 4.148 17 C 0.067 3.933 18 F -0.120 7.120 19 C -0.166 4.166 20 C -0.082 4.082 21 H 0.063 0.937 22 H 0.012 0.988 23 H 0.003 0.997 24 H 0.135 0.865 25 H 0.132 0.868 26 H 0.183 0.817 27 H 0.197 0.803 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.079 -12.046 2.455 12.953 hybrid contribution -0.186 -1.398 -1.762 2.256 sum 3.893 -13.444 0.693 14.013 Atomic orbital electron populations 1.70918 1.08235 1.29771 1.48710 1.27369 0.96457 1.06830 0.92786 0.82956 0.74117 0.71092 0.78168 1.21513 1.19046 1.19318 1.22375 0.94930 0.92359 1.54949 0.91847 1.19078 0.94115 0.92907 0.94430 1.20506 0.96783 0.91089 0.98132 0.89171 1.24422 0.99869 1.01917 0.94569 1.85719 1.54105 1.40066 1.12132 1.22338 1.04729 0.99013 0.95529 1.20605 0.95850 0.92209 0.99610 1.21376 1.01815 1.02019 0.89564 1.17489 0.99372 0.94006 0.82393 1.91488 1.86654 1.86950 1.46869 1.20888 1.00970 0.95973 0.98732 1.20913 0.99144 0.94969 0.93158 0.93743 0.98809 0.99687 0.86479 0.86848 0.81679 0.80300 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.08 13.65 21.45 0.29 -57.78 15 2 C -0.04 -2.08 5.46 84.65 0.46 -1.62 15 3 Si 1.12 48.83 29.90 68.60 2.05 50.88 15 4 H -0.29 -12.95 7.11 99.48 0.71 -12.25 15 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 15 6 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 7 C -0.61 -32.82 8.04 25.60 0.21 -32.62 15 8 H 0.06 3.21 7.51 -2.91 -0.02 3.19 15 9 C 0.03 1.61 3.68 29.85 0.11 1.72 15 10 C -0.05 -1.82 2.53 -11.10 -0.03 -1.85 15 11 H 0.09 3.48 8.14 -2.39 -0.02 3.46 15 12 C -0.06 -2.11 6.84 72.37 0.49 -1.61 15 13 S -0.16 -5.53 23.04 -56.49 -1.30 -6.83 15 14 C -0.10 -3.40 6.47 22.51 0.15 -3.26 15 15 C -0.06 -1.51 10.05 22.36 0.22 -1.28 15 16 C -0.13 -2.98 10.06 22.29 0.22 -2.76 15 17 C 0.09 2.56 7.26 22.24 0.16 2.72 15 18 F -0.14 -3.99 17.26 44.97 0.78 -3.21 15 19 C -0.14 -4.85 9.95 22.56 0.22 -4.62 15 20 C -0.08 -2.77 5.22 -19.33 -0.10 -2.87 15 21 H 0.25 16.04 7.22 -92.71 -0.67 15.37 15 22 H -0.01 -0.36 7.98 -2.39 -0.02 -0.38 15 23 H -0.02 -0.84 8.00 -2.38 -0.02 -0.86 15 24 H 0.12 3.34 8.14 -2.39 -0.02 3.32 15 25 H 0.11 4.39 6.91 -2.38 -0.02 4.37 15 26 H 0.17 3.15 8.06 -2.91 -0.02 3.12 15 27 H 0.18 2.77 8.06 -2.91 -0.02 2.75 15 28 H 0.13 4.32 8.06 -2.91 -0.02 4.29 15 Total: -1.00 -63.84 258.82 5.21 -58.63 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.27 Total: 6.36 kcal Atomic # 6 Polarization: -50.16 SS G_CDS: 2.12 Total: -48.04 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.29 Total: -57.78 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.05 Total: 50.88 kcal Atomic # 16 Polarization: -5.53 SS G_CDS: -1.30 Total: -6.83 kcal Total: -63.84 5.21 -58.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.312 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds