Wall clock time and date at job start Mon Mar 30 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 110.80885 * 2 1 4 4 H 1.08003 * 119.99957 * 123.31644 * 3 2 1 5 5 C 1.37878 * 120.00508 * 303.32028 * 3 2 1 6 6 N 1.31517 * 119.99900 * 0.02562 * 5 3 2 7 7 Si 1.86798 * 120.00479 * 179.97438 * 5 3 2 8 8 H 1.48503 * 109.47169 * 59.99619 * 7 5 3 9 9 H 1.48494 * 109.47360 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46758 * 300.00415 * 7 5 3 11 11 C 1.54706 * 110.74987 * 123.32203 * 2 1 3 12 12 C 1.51651 * 101.95769 * 143.62889 * 11 2 1 13 13 C 1.37755 * 132.15097 * 164.56489 * 12 11 2 14 14 C 1.38323 * 119.98967 * 180.36192 * 13 12 11 15 15 C 1.38398 * 119.75966 * 0.02562 * 14 13 12 16 16 Cl 1.73599 * 119.84235 * 179.83166 * 15 14 13 17 17 C 1.38046 * 120.32208 * 359.80702 * 15 14 13 18 18 C 1.38892 * 107.03917 * 344.59480 * 12 11 2 19 19 O 1.36134 * 111.23196 * 358.92545 * 18 12 11 20 20 H 1.09003 * 109.46945 * 296.68102 * 1 2 3 21 21 H 1.08997 * 109.47646 * 56.68069 * 1 2 3 22 22 H 1.08999 * 109.47389 * 176.68233 * 1 2 3 23 23 H 0.96994 * 120.00376 * 179.97438 * 6 5 3 24 24 H 1.09002 * 110.94176 * 25.45359 * 11 2 1 25 25 H 1.08997 * 110.93460 * 261.80270 * 11 2 1 26 26 H 1.07993 * 120.00240 * 0.34555 * 13 12 11 27 27 H 1.08003 * 120.12250 * 180.02562 * 14 13 12 28 28 H 1.08000 * 119.89140 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0653 1.4086 0.0000 4 1 2.7374 1.7309 0.7816 5 6 1.6972 2.2862 -0.9977 6 7 0.8783 1.8940 -1.9492 7 14 2.3602 4.0325 -0.9973 8 1 3.8427 3.9992 -1.0779 9 1 1.8168 4.7686 -2.1669 10 1 1.9479 4.7182 0.2538 11 6 2.0781 -0.7947 1.2089 12 6 3.3065 -1.4588 0.6174 13 6 4.3937 -2.0750 1.1970 14 6 5.3962 -2.6002 0.4016 15 6 5.3019 -2.5033 -0.9758 16 17 6.5609 -3.1578 -1.9759 17 6 4.2114 -1.8891 -1.5582 18 6 3.1966 -1.3616 -0.7637 19 8 2.0404 -0.7396 -1.1236 20 1 -0.3633 0.4615 0.9183 21 1 -0.3634 0.5645 -0.8587 22 1 -0.3634 -1.0259 -0.0595 23 1 0.6190 2.5113 -2.6509 24 1 1.3566 -1.5394 1.5451 25 1 2.3518 -0.1246 2.0237 26 1 4.4635 -2.1478 2.2722 27 1 6.2493 -3.0841 0.8537 28 1 4.1448 -1.8177 -2.6338 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260289989.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:15 Heat of formation + Delta-G solvation = -19.566297 kcal Electronic energy + Delta-G solvation = -14719.332799 eV Core-core repulsion = 12147.324786 eV Total energy + Delta-G solvation = -2572.008013 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.16121 -37.18426 -35.77669 -33.26697 -31.74035 -29.69932 -29.41923 -25.66087 -25.24914 -21.91507 -20.95008 -20.14644 -17.38871 -16.39364 -15.42495 -15.02267 -14.65421 -14.23594 -13.58155 -13.16012 -13.02260 -12.55968 -12.41198 -11.82927 -11.44291 -11.28757 -11.06521 -10.95503 -10.93557 -10.72458 -10.50613 -10.27584 -10.21431 -9.49528 -9.17932 -8.68591 -8.26131 -7.25022 -6.18326 -4.39777 1.67754 1.95411 2.42966 3.21610 3.26990 3.29655 4.13921 4.25395 4.55083 5.17361 5.19895 5.42398 5.58947 5.73908 5.84570 6.15448 6.17380 6.43512 6.53549 6.66163 6.69483 6.75735 6.83277 7.01271 7.08671 7.33041 7.55734 7.83064 8.05294 8.36987 8.71239 9.34869 10.81352 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.028207 B = 0.007998 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.419105 B = 3500.111719 C = 3893.818388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.228 3.772 3 C -0.543 4.543 4 H 0.065 0.935 5 C 0.083 3.917 6 N -0.859 5.859 7 Si 0.897 3.103 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C -0.103 4.103 12 C -0.172 4.172 13 C -0.065 4.065 14 C -0.169 4.169 15 C 0.001 3.999 16 Cl -0.086 7.086 17 C -0.161 4.161 18 C 0.167 3.833 19 O -0.286 6.286 20 H 0.050 0.950 21 H 0.100 0.900 22 H 0.022 0.978 23 H 0.266 0.734 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.123 0.877 27 H 0.126 0.874 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.874 -6.540 3.613 8.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.194 3.806 3 C -0.580 4.580 4 H 0.083 0.917 5 C -0.124 4.124 6 N -0.495 5.495 7 Si 0.724 3.276 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.198 1.198 11 C -0.140 4.140 12 C -0.173 4.173 13 C -0.083 4.083 14 C -0.188 4.188 15 C -0.026 4.026 16 Cl -0.058 7.058 17 C -0.180 4.180 18 C 0.117 3.883 19 O -0.199 6.199 20 H 0.069 0.931 21 H 0.119 0.881 22 H 0.041 0.959 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.141 0.859 27 H 0.144 0.856 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.715 -6.513 3.142 8.632 hybrid contribution 0.612 0.929 -0.045 1.113 sum 5.326 -5.584 3.097 8.315 Atomic orbital electron populations 1.21751 0.94258 0.99177 1.03706 1.20487 0.92520 0.89705 0.77923 1.21234 1.30547 0.94323 1.11874 0.91675 1.25052 0.93780 0.98883 0.94688 1.69881 1.31747 1.35670 1.12152 0.86578 0.79643 0.83616 0.77789 1.19911 1.20910 1.19835 1.22009 0.93178 0.98127 1.00661 1.21109 0.98095 1.03121 0.94943 1.20107 0.92254 0.96809 0.99171 1.20595 1.00961 1.06178 0.91094 1.20267 0.90590 1.00759 0.90943 1.98322 1.52188 1.84954 1.70287 1.19924 0.92496 1.05446 1.00177 1.19524 0.87580 0.89321 0.91895 1.87150 1.30729 1.59672 1.42331 0.93089 0.88128 0.95871 0.92369 0.91311 0.90044 0.85942 0.85642 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 8.73 37.16 0.32 -2.68 15 2 C 0.23 5.55 0.76 -90.88 -0.07 5.48 15 3 C -0.54 -14.34 8.23 -34.44 -0.28 -14.63 15 4 H 0.07 1.70 7.62 -52.48 -0.40 1.30 15 5 C 0.08 2.20 5.30 -17.82 -0.09 2.10 15 6 N -0.86 -23.53 11.02 55.43 0.61 -22.92 15 7 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 15 8 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 11 C -0.10 -2.11 6.16 -26.52 -0.16 -2.27 15 12 C -0.17 -3.50 6.26 -104.09 -0.65 -4.15 15 13 C -0.07 -1.11 10.03 -39.73 -0.40 -1.51 15 14 C -0.17 -2.75 9.84 -39.49 -0.39 -3.14 15 15 C 0.00 0.02 6.31 -39.59 -0.25 -0.23 15 16 Cl -0.09 -1.30 28.94 -51.86 -1.50 -2.80 15 17 C -0.16 -3.24 9.84 -39.27 -0.39 -3.62 15 18 C 0.17 3.77 6.95 -38.96 -0.27 3.49 15 19 O -0.29 -7.36 10.36 -20.17 -0.21 -7.57 15 20 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 21 H 0.10 2.55 5.85 -51.93 -0.30 2.24 15 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 15 23 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 24 H 0.07 1.27 7.92 -51.93 -0.41 0.86 15 25 H 0.08 1.59 7.78 -51.93 -0.40 1.19 15 26 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.13 1.68 8.06 -52.48 -0.42 1.26 15 28 H 0.13 2.49 8.06 -52.49 -0.42 2.07 15 LS Contribution 257.53 15.07 3.88 3.88 Total: -1.00 -27.56 257.53 -7.64 -35.20 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -2.77 Total: -0.14 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -2.63 Total: -21.15 kcal Atomic # 7 Polarization: -23.53 SS G_CDS: 0.61 Total: -22.92 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: -0.21 Total: -7.57 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.56 -7.64 -35.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289989.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.634 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds