Wall clock time and date at job start Mon Mar 30 2020 05:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 110.80885 * 2 1 4 4 H 1.08003 * 119.99957 * 123.31644 * 3 2 1 5 5 C 1.37878 * 120.00508 * 303.32028 * 3 2 1 6 6 N 1.31517 * 119.99900 * 0.02562 * 5 3 2 7 7 Si 1.86798 * 120.00479 * 179.97438 * 5 3 2 8 8 H 1.48503 * 109.47169 * 59.99619 * 7 5 3 9 9 H 1.48494 * 109.47360 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46758 * 300.00415 * 7 5 3 11 11 C 1.54706 * 110.74987 * 123.32203 * 2 1 3 12 12 C 1.51651 * 101.95769 * 143.62889 * 11 2 1 13 13 C 1.37755 * 132.15097 * 164.56489 * 12 11 2 14 14 C 1.38323 * 119.98967 * 180.36192 * 13 12 11 15 15 C 1.38398 * 119.75966 * 0.02562 * 14 13 12 16 16 Cl 1.73599 * 119.84235 * 179.83166 * 15 14 13 17 17 C 1.38046 * 120.32208 * 359.80702 * 15 14 13 18 18 C 1.38892 * 107.03917 * 344.59480 * 12 11 2 19 19 O 1.36134 * 111.23196 * 358.92545 * 18 12 11 20 20 H 1.09003 * 109.46945 * 296.68102 * 1 2 3 21 21 H 1.08997 * 109.47646 * 56.68069 * 1 2 3 22 22 H 1.08999 * 109.47389 * 176.68233 * 1 2 3 23 23 H 0.96994 * 120.00376 * 179.97438 * 6 5 3 24 24 H 1.09002 * 110.94176 * 25.45359 * 11 2 1 25 25 H 1.08997 * 110.93460 * 261.80270 * 11 2 1 26 26 H 1.07993 * 120.00240 * 0.34555 * 13 12 11 27 27 H 1.08003 * 120.12250 * 180.02562 * 14 13 12 28 28 H 1.08000 * 119.89140 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0653 1.4086 0.0000 4 1 2.7374 1.7309 0.7816 5 6 1.6972 2.2862 -0.9977 6 7 0.8783 1.8940 -1.9492 7 14 2.3602 4.0325 -0.9973 8 1 3.8427 3.9992 -1.0779 9 1 1.8168 4.7686 -2.1669 10 1 1.9479 4.7182 0.2538 11 6 2.0781 -0.7947 1.2089 12 6 3.3065 -1.4588 0.6174 13 6 4.3937 -2.0750 1.1970 14 6 5.3962 -2.6002 0.4016 15 6 5.3019 -2.5033 -0.9758 16 17 6.5609 -3.1578 -1.9759 17 6 4.2114 -1.8891 -1.5582 18 6 3.1966 -1.3616 -0.7637 19 8 2.0404 -0.7396 -1.1236 20 1 -0.3633 0.4615 0.9183 21 1 -0.3634 0.5645 -0.8587 22 1 -0.3634 -1.0259 -0.0595 23 1 0.6190 2.5113 -2.6509 24 1 1.3566 -1.5394 1.5451 25 1 2.3518 -0.1246 2.0237 26 1 4.4635 -2.1478 2.2722 27 1 6.2493 -3.0841 0.8537 28 1 4.1448 -1.8177 -2.6338 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260289989.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:14 Heat of formation + Delta-G solvation = -34.146135 kcal Electronic energy + Delta-G solvation = -14719.965028 eV Core-core repulsion = 12147.324786 eV Total energy + Delta-G solvation = -2572.640243 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.76687 -38.66257 -37.14837 -35.14768 -33.42573 -31.36941 -30.91181 -27.48174 -26.99241 -23.40483 -22.44565 -21.93097 -19.19490 -17.92934 -17.02147 -16.76233 -16.33724 -15.93940 -15.13862 -14.71739 -14.53881 -14.11803 -13.93043 -13.53337 -13.26439 -12.87531 -12.77957 -12.68255 -12.57221 -12.21776 -12.08255 -11.94527 -11.76435 -11.22987 -10.94260 -10.65967 -9.69636 -8.85021 -8.14503 -6.43436 0.22601 0.49047 1.07738 1.39507 1.40948 1.48381 2.35803 2.63189 2.89136 3.28225 3.73552 3.98799 4.10459 4.30895 4.35822 4.60091 4.71358 4.88276 4.92105 4.97693 5.11062 5.24155 5.32496 5.32988 5.55134 5.63974 5.78154 5.97437 6.14998 6.56374 6.82410 7.34593 8.83080 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.028207 B = 0.007998 C = 0.007189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.419105 B = 3500.111719 C = 3893.818388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.211 3.789 3 C -0.558 4.558 4 H 0.060 0.940 5 C 0.036 3.964 6 N -0.888 5.888 7 Si 0.954 3.046 8 H -0.278 1.278 9 H -0.281 1.281 10 H -0.261 1.261 11 C -0.094 4.094 12 C -0.182 4.182 13 C -0.057 4.057 14 C -0.152 4.152 15 C -0.003 4.003 16 Cl -0.062 7.062 17 C -0.174 4.174 18 C 0.120 3.880 19 O -0.324 6.324 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.265 0.735 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.162 0.838 27 H 0.165 0.835 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.651 -7.318 5.279 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.176 3.824 3 C -0.595 4.595 4 H 0.078 0.922 5 C -0.167 4.167 6 N -0.524 5.524 7 Si 0.779 3.221 8 H -0.203 1.203 9 H -0.207 1.207 10 H -0.186 1.186 11 C -0.131 4.131 12 C -0.183 4.183 13 C -0.075 4.075 14 C -0.170 4.170 15 C -0.030 4.030 16 Cl -0.033 7.033 17 C -0.194 4.194 18 C 0.072 3.928 19 O -0.238 6.238 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.055 0.945 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.180 0.820 27 H 0.182 0.818 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.502 -7.301 4.819 10.900 hybrid contribution 0.184 1.045 -0.575 1.207 sum 6.686 -6.257 4.244 10.092 Atomic orbital electron populations 1.21662 0.94063 0.99611 1.03041 1.20616 0.92942 0.89408 0.79419 1.21546 1.30313 0.95962 1.11690 0.92166 1.25780 0.94104 1.02354 0.94504 1.70024 1.33017 1.36650 1.12753 0.85682 0.78528 0.79677 0.78196 1.20346 1.20650 1.18581 1.21886 0.93775 0.98257 0.99186 1.21280 0.99131 1.04013 0.93922 1.20556 0.90718 0.94976 1.01270 1.21091 1.01414 1.04204 0.90299 1.20419 0.90349 1.00109 0.92074 1.98331 1.50702 1.84421 1.69893 1.20056 0.93171 1.06204 0.99983 1.19904 0.87830 0.91401 0.93671 1.87048 1.32580 1.60909 1.43244 0.91700 0.91034 0.94489 0.92612 0.89437 0.89306 0.82044 0.81777 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.73 71.98 0.63 -5.25 15 2 C 0.21 10.38 0.76 -10.96 -0.01 10.38 15 3 C -0.56 -29.89 8.23 25.60 0.21 -29.68 15 4 H 0.06 3.17 7.62 -2.91 -0.02 3.15 15 5 C 0.04 1.95 5.30 84.65 0.45 2.40 15 6 N -0.89 -50.21 11.02 21.45 0.24 -49.97 15 7 Si 0.95 42.58 29.54 68.60 2.03 44.61 15 8 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 10 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 11 C -0.09 -3.76 6.16 30.73 0.19 -3.57 15 12 C -0.18 -7.16 6.26 -19.52 -0.12 -7.28 15 13 C -0.06 -1.74 10.03 22.18 0.22 -1.52 15 14 C -0.15 -4.31 9.84 22.33 0.22 -4.09 15 15 C 0.00 -0.09 6.31 22.26 0.14 0.05 15 16 Cl -0.06 -1.73 28.94 -2.72 -0.08 -1.81 15 17 C -0.17 -7.01 9.84 22.47 0.22 -6.79 15 18 C 0.12 5.47 6.95 22.67 0.16 5.63 15 19 O -0.32 -17.17 10.36 -95.08 -0.98 -18.16 15 20 H 0.06 2.72 8.14 -2.39 -0.02 2.70 15 21 H 0.07 3.75 5.85 -2.39 -0.01 3.74 15 22 H 0.04 1.54 8.14 -2.39 -0.02 1.52 15 23 H 0.26 14.26 8.31 -92.71 -0.77 13.49 15 24 H 0.09 3.09 7.92 -2.39 -0.02 3.07 15 25 H 0.09 3.33 7.78 -2.39 -0.02 3.32 15 26 H 0.16 3.64 8.06 -2.91 -0.02 3.61 15 27 H 0.16 3.44 8.06 -2.91 -0.02 3.42 15 28 H 0.12 4.86 8.06 -2.91 -0.02 4.84 15 Total: -1.00 -60.57 257.53 4.67 -55.89 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.17 Total: 9.17 kcal Atomic # 6 Polarization: -42.04 SS G_CDS: 2.31 Total: -39.73 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.24 Total: -49.97 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.98 Total: -18.16 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -60.57 4.67 -55.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260289989.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.747 kcal (2) G-P(sol) polarization free energy of solvation -60.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds