Wall clock time and date at job start Mon Mar 30 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 110.66717 * 2 1 4 4 H 1.08004 * 119.99694 * 267.63617 * 3 2 1 5 5 C 1.37874 * 120.00093 * 87.63376 * 3 2 1 6 6 N 1.31509 * 120.00376 * 174.55484 * 5 3 2 7 7 Si 1.86800 * 119.99761 * 354.55503 * 5 3 2 8 8 H 1.48499 * 109.47256 * 86.11206 * 7 5 3 9 9 H 1.48503 * 109.47155 * 206.10832 * 7 5 3 10 10 H 1.48503 * 109.47348 * 326.10970 * 7 5 3 11 11 C 1.54709 * 110.74918 * 236.78502 * 2 1 3 12 12 C 1.51650 * 101.92633 * 266.96331 * 11 2 1 13 13 C 1.37750 * 132.15507 * 164.59393 * 12 11 2 14 14 C 1.38444 * 119.96632 * 180.36125 * 13 12 11 15 15 Cl 1.73606 * 120.12724 * 179.97438 * 14 13 12 16 16 C 1.38383 * 119.74269 * 0.02562 * 14 13 12 17 17 C 1.37930 * 120.33455 * 359.82881 * 16 14 13 18 18 C 1.38870 * 107.04748 * 344.61268 * 12 11 2 19 19 O 1.36161 * 111.22675 * 358.92958 * 18 12 11 20 20 H 1.09010 * 109.46846 * 189.10924 * 1 2 3 21 21 H 1.09003 * 109.46995 * 69.11625 * 1 2 3 22 22 H 1.08996 * 109.46839 * 309.10801 * 1 2 3 23 23 H 0.96996 * 120.00728 * 180.02562 * 6 5 3 24 24 H 1.09000 * 110.94229 * 25.12082 * 11 2 1 25 25 H 1.08996 * 110.94093 * 148.80746 * 11 2 1 26 26 H 1.08000 * 120.01393 * 0.38323 * 13 12 11 27 27 H 1.08004 * 119.83262 * 179.81365 * 16 14 13 28 28 H 1.08006 * 119.87160 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4100 0.0000 4 1 2.2885 1.9016 -0.9346 5 6 2.2590 2.0724 1.1930 6 7 2.8225 3.2606 1.2001 7 14 1.7258 1.2821 2.7993 8 1 2.8100 0.4000 3.3009 9 1 1.4449 2.3404 3.8025 10 1 0.4985 0.4775 2.5717 11 6 2.0781 -0.7925 -1.2104 12 6 2.2626 -2.1774 -0.6206 13 6 2.4530 -3.4118 -1.2016 14 6 2.5879 -4.5370 -0.4063 15 17 2.8272 -6.0948 -1.1341 16 6 2.5301 -4.4152 0.9709 17 6 2.3425 -3.1792 1.5537 18 6 2.2105 -2.0420 0.7605 19 8 2.0394 -0.7405 1.1221 20 1 -0.3633 -1.0148 0.1627 21 1 -0.3633 0.3663 -0.9602 22 1 -0.3633 0.6482 0.7974 23 1 2.9616 3.7266 2.0394 24 1 1.3542 -0.8094 -2.0251 25 1 3.0304 -0.3820 -1.5458 26 1 2.4973 -3.5017 -2.2769 27 1 2.6321 -5.2924 1.5926 28 1 2.2990 -3.0927 2.6294 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260299818.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:21 Heat of formation + Delta-G solvation = -17.511704 kcal Electronic energy + Delta-G solvation = -14776.296312 eV Core-core repulsion = 12204.377392 eV Total energy + Delta-G solvation = -2571.918920 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.64911 -37.51615 -35.96912 -33.19288 -32.14805 -30.41610 -29.47568 -26.25172 -25.28896 -22.11189 -21.38757 -20.18130 -17.47226 -16.84910 -15.92260 -15.39857 -14.87656 -14.01269 -13.84239 -13.38457 -13.00175 -12.86511 -12.70578 -12.43623 -11.98095 -11.68316 -11.51909 -11.10382 -11.07294 -10.64529 -10.53363 -10.38347 -10.15987 -9.49130 -9.27850 -8.68900 -8.67369 -7.54606 -6.25559 -4.37223 1.49183 1.52480 2.31441 3.22577 3.41907 3.52334 3.86211 4.15940 4.47869 4.93946 5.06052 5.12172 5.41521 5.46873 5.53219 5.83185 6.00997 6.14659 6.22840 6.29946 6.34823 6.42082 6.45937 6.65727 6.76967 6.91595 7.11106 7.37327 7.92631 8.23730 8.69063 9.34711 10.83576 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.046259 B = 0.007419 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.136585 B = 3773.169106 C = 4056.572620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.200 3.800 3 C -0.525 4.525 4 H 0.092 0.908 5 C 0.087 3.913 6 N -0.885 5.885 7 Si 0.904 3.096 8 H -0.276 1.276 9 H -0.302 1.302 10 H -0.259 1.259 11 C -0.090 4.090 12 C -0.161 4.161 13 C -0.064 4.064 14 C -0.081 4.081 15 Cl -0.086 7.086 16 C -0.078 4.078 17 C -0.150 4.150 18 C 0.135 3.865 19 O -0.296 6.296 20 H 0.032 0.968 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.269 0.731 24 H 0.078 0.922 25 H 0.093 0.907 26 H 0.129 0.871 27 H 0.133 0.867 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.112 -13.725 -2.210 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.164 3.836 3 C -0.562 4.562 4 H 0.110 0.890 5 C -0.119 4.119 6 N -0.520 5.520 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.231 1.231 10 H -0.184 1.184 11 C -0.128 4.128 12 C -0.162 4.162 13 C -0.083 4.083 14 C -0.108 4.108 15 Cl -0.057 7.057 16 C -0.097 4.097 17 C -0.169 4.169 18 C 0.088 3.912 19 O -0.211 6.211 20 H 0.051 0.949 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.997 -13.552 -1.978 13.841 hybrid contribution -0.126 -0.481 0.681 0.843 sum -2.123 -14.033 -1.298 14.252 Atomic orbital electron populations 1.22372 0.96484 0.99694 1.02411 1.20944 0.91246 0.92108 0.79264 1.20725 1.46624 0.93157 0.95671 0.89002 1.24969 0.92954 0.94167 0.99825 1.69905 1.40727 1.13599 1.27814 0.86325 0.80587 0.77695 0.81867 1.20200 1.23119 1.18390 1.21979 1.02675 0.88782 0.99326 1.21044 1.04947 0.95592 0.94656 1.20063 0.99055 0.89516 0.99670 1.20460 1.11378 0.85993 0.92945 1.98321 1.95811 1.27975 1.83617 1.20575 0.99413 0.97128 0.92557 1.20191 1.07593 0.89220 0.99922 1.20010 0.91878 0.86721 0.92639 1.86805 1.78481 1.14468 1.41346 0.94901 0.91724 0.91869 0.92170 0.90340 0.88910 0.85356 0.84947 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.44 37.16 0.31 -2.79 15 2 C 0.20 4.55 0.67 -90.87 -0.06 4.49 15 3 C -0.53 -14.09 8.79 -34.44 -0.30 -14.40 15 4 H 0.09 2.60 8.06 -52.48 -0.42 2.17 15 5 C 0.09 2.44 5.46 -17.82 -0.10 2.34 15 6 N -0.89 -26.21 13.96 55.43 0.77 -25.44 15 7 Si 0.90 22.62 24.48 -169.99 -4.16 18.46 15 8 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 9 H -0.30 -7.50 7.11 56.52 0.40 -7.10 15 10 H -0.26 -6.19 5.65 56.52 0.32 -5.87 15 11 C -0.09 -1.76 6.17 -26.52 -0.16 -1.92 15 12 C -0.16 -2.97 6.26 -104.10 -0.65 -3.62 15 13 C -0.06 -1.01 9.82 -39.68 -0.39 -1.40 15 14 C -0.08 -1.20 6.33 -39.45 -0.25 -1.45 15 15 Cl -0.09 -1.10 28.97 -51.86 -1.50 -2.60 15 16 C -0.08 -1.14 9.81 -39.64 -0.39 -1.53 15 17 C -0.15 -2.54 10.06 -39.31 -0.40 -2.94 15 18 C 0.13 2.71 6.87 -38.96 -0.27 2.44 15 19 O -0.30 -6.97 6.21 -20.25 -0.13 -7.09 15 20 H 0.03 0.61 8.02 -51.92 -0.42 0.20 15 21 H 0.06 1.18 8.10 -51.93 -0.42 0.76 15 22 H 0.06 1.36 6.24 -51.93 -0.32 1.03 15 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 24 H 0.08 1.33 7.89 -51.93 -0.41 0.92 15 25 H 0.09 1.85 7.92 -51.93 -0.41 1.44 15 26 H 0.13 1.74 8.06 -52.49 -0.42 1.32 15 27 H 0.13 1.56 8.06 -52.48 -0.42 1.13 15 28 H 0.13 2.00 8.06 -52.48 -0.42 1.58 15 LS Contribution 250.86 15.07 3.78 3.78 Total: -1.00 -28.76 250.86 -6.78 -35.54 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -2.89 Total: -1.88 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -2.65 Total: -20.78 kcal Atomic # 7 Polarization: -26.21 SS G_CDS: 0.77 Total: -25.44 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.13 Total: -7.09 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.16 Total: 18.46 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -28.76 -6.78 -35.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299818.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.028 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds