Wall clock time and date at job start Mon Mar 30 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 110.66717 * 2 1 4 4 H 1.08004 * 119.99694 * 267.63617 * 3 2 1 5 5 C 1.37874 * 120.00093 * 87.63376 * 3 2 1 6 6 N 1.31509 * 120.00376 * 174.55484 * 5 3 2 7 7 Si 1.86800 * 119.99761 * 354.55503 * 5 3 2 8 8 H 1.48499 * 109.47256 * 86.11206 * 7 5 3 9 9 H 1.48503 * 109.47155 * 206.10832 * 7 5 3 10 10 H 1.48503 * 109.47348 * 326.10970 * 7 5 3 11 11 C 1.54709 * 110.74918 * 236.78502 * 2 1 3 12 12 C 1.51650 * 101.92633 * 266.96331 * 11 2 1 13 13 C 1.37750 * 132.15507 * 164.59393 * 12 11 2 14 14 C 1.38444 * 119.96632 * 180.36125 * 13 12 11 15 15 Cl 1.73606 * 120.12724 * 179.97438 * 14 13 12 16 16 C 1.38383 * 119.74269 * 0.02562 * 14 13 12 17 17 C 1.37930 * 120.33455 * 359.82881 * 16 14 13 18 18 C 1.38870 * 107.04748 * 344.61268 * 12 11 2 19 19 O 1.36161 * 111.22675 * 358.92958 * 18 12 11 20 20 H 1.09010 * 109.46846 * 189.10924 * 1 2 3 21 21 H 1.09003 * 109.46995 * 69.11625 * 1 2 3 22 22 H 1.08996 * 109.46839 * 309.10801 * 1 2 3 23 23 H 0.96996 * 120.00728 * 180.02562 * 6 5 3 24 24 H 1.09000 * 110.94229 * 25.12082 * 11 2 1 25 25 H 1.08996 * 110.94093 * 148.80746 * 11 2 1 26 26 H 1.08000 * 120.01393 * 0.38323 * 13 12 11 27 27 H 1.08004 * 119.83262 * 179.81365 * 16 14 13 28 28 H 1.08006 * 119.87160 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0619 1.4100 0.0000 4 1 2.2885 1.9016 -0.9346 5 6 2.2590 2.0724 1.1930 6 7 2.8225 3.2606 1.2001 7 14 1.7258 1.2821 2.7993 8 1 2.8100 0.4000 3.3009 9 1 1.4449 2.3404 3.8025 10 1 0.4985 0.4775 2.5717 11 6 2.0781 -0.7925 -1.2104 12 6 2.2626 -2.1774 -0.6206 13 6 2.4530 -3.4118 -1.2016 14 6 2.5879 -4.5370 -0.4063 15 17 2.8272 -6.0948 -1.1341 16 6 2.5301 -4.4152 0.9709 17 6 2.3425 -3.1792 1.5537 18 6 2.2105 -2.0420 0.7605 19 8 2.0394 -0.7405 1.1221 20 1 -0.3633 -1.0148 0.1627 21 1 -0.3633 0.3663 -0.9602 22 1 -0.3633 0.6482 0.7974 23 1 2.9616 3.7266 2.0394 24 1 1.3542 -0.8094 -2.0251 25 1 3.0304 -0.3820 -1.5458 26 1 2.4973 -3.5017 -2.2769 27 1 2.6321 -5.2924 1.5926 28 1 2.2990 -3.0927 2.6294 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260299818.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:21 Heat of formation + Delta-G solvation = -34.201616 kcal Electronic energy + Delta-G solvation = -14777.020041 eV Core-core repulsion = 12204.377392 eV Total energy + Delta-G solvation = -2572.642649 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.14140 -38.84587 -37.14269 -35.08192 -33.83160 -31.97976 -30.81122 -27.78528 -27.17828 -23.46384 -22.74610 -21.89956 -19.34340 -18.28031 -17.26316 -16.95030 -16.70418 -15.65832 -15.19821 -14.84740 -14.73747 -14.41777 -14.15965 -13.93561 -13.45797 -13.27475 -13.00202 -12.60520 -12.59262 -12.33413 -12.27319 -11.76553 -11.73634 -11.26798 -11.07713 -10.75321 -9.94625 -8.95076 -8.41039 -6.53414 0.20050 0.24933 1.14931 1.29775 1.42633 1.50941 2.29663 2.53872 2.69409 3.07389 3.59703 3.80488 3.97451 4.17064 4.25328 4.38832 4.55150 4.60814 4.76648 4.90093 4.90537 5.01059 5.12684 5.19689 5.42581 5.46761 5.50832 5.57986 6.11735 6.31802 6.59107 7.21872 8.71952 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.046259 B = 0.007419 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.136585 B = 3773.169106 C = 4056.572620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.191 3.809 3 C -0.524 4.524 4 H 0.063 0.937 5 C 0.036 3.964 6 N -0.932 5.932 7 Si 0.959 3.041 8 H -0.284 1.284 9 H -0.303 1.303 10 H -0.243 1.243 11 C -0.085 4.085 12 C -0.168 4.168 13 C -0.061 4.061 14 C -0.076 4.076 15 Cl -0.061 7.061 16 C -0.068 4.068 17 C -0.150 4.150 18 C 0.093 3.907 19 O -0.327 6.327 20 H 0.051 0.949 21 H 0.081 0.919 22 H 0.047 0.953 23 H 0.269 0.731 24 H 0.103 0.897 25 H 0.077 0.923 26 H 0.151 0.849 27 H 0.167 0.833 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.776 -17.024 -2.382 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.155 3.845 3 C -0.561 4.561 4 H 0.081 0.919 5 C -0.165 4.165 6 N -0.570 5.570 7 Si 0.789 3.211 8 H -0.211 1.211 9 H -0.232 1.232 10 H -0.167 1.167 11 C -0.122 4.122 12 C -0.169 4.169 13 C -0.080 4.080 14 C -0.102 4.102 15 Cl -0.032 7.032 16 C -0.086 4.086 17 C -0.169 4.169 18 C 0.047 3.953 19 O -0.243 6.243 20 H 0.070 0.930 21 H 0.100 0.900 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.121 0.879 25 H 0.095 0.905 26 H 0.169 0.831 27 H 0.184 0.816 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.673 -16.882 -2.166 17.229 hybrid contribution 0.143 0.355 0.617 0.726 sum -2.529 -16.527 -1.549 16.791 Atomic orbital electron populations 1.22264 0.94669 1.00551 1.02875 1.20875 0.92432 0.90248 0.80983 1.20994 1.45254 0.95618 0.94278 0.91928 1.25687 0.93361 0.94554 1.02881 1.70016 1.43231 1.15298 1.28497 0.85462 0.80534 0.76677 0.78444 1.21098 1.23238 1.16716 1.21803 1.02406 0.89257 0.98749 1.20950 1.06194 0.95810 0.93959 1.20283 0.97990 0.88691 1.00994 1.20637 1.09511 0.86872 0.93226 1.98342 1.95555 1.26040 1.83255 1.20929 0.97489 0.97258 0.92914 1.20466 1.06845 0.89024 1.00556 1.20358 0.94895 0.86044 0.94036 1.86626 1.79790 1.16493 1.41370 0.93022 0.89984 0.93407 0.92179 0.87891 0.90508 0.83123 0.81579 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.78 8.44 71.98 0.61 -5.17 15 2 C 0.19 8.63 0.67 -10.96 -0.01 8.63 15 3 C -0.52 -28.96 8.79 25.60 0.22 -28.73 15 4 H 0.06 3.71 8.06 -2.91 -0.02 3.69 15 5 C 0.04 2.07 5.46 84.65 0.46 2.54 15 6 N -0.93 -57.33 13.96 21.45 0.30 -57.03 15 7 Si 0.96 47.69 24.48 68.60 1.68 49.37 15 8 H -0.28 -14.33 7.11 99.48 0.71 -13.63 15 9 H -0.30 -14.83 7.11 99.48 0.71 -14.12 15 10 H -0.24 -11.28 5.65 99.48 0.56 -10.71 15 11 C -0.09 -3.23 6.17 30.73 0.19 -3.04 15 12 C -0.17 -5.86 6.26 -19.53 -0.12 -5.98 15 13 C -0.06 -1.72 9.82 22.20 0.22 -1.50 15 14 C -0.08 -1.94 6.33 22.35 0.14 -1.80 15 15 Cl -0.06 -1.30 28.97 -2.72 -0.08 -1.37 15 16 C -0.07 -1.70 9.81 22.23 0.22 -1.48 15 17 C -0.15 -4.67 10.06 22.45 0.23 -4.44 15 18 C 0.09 3.57 6.87 22.67 0.16 3.73 15 19 O -0.33 -15.20 6.21 -95.38 -0.59 -15.79 15 20 H 0.05 1.83 8.02 -2.38 -0.02 1.81 15 21 H 0.08 2.88 8.10 -2.39 -0.02 2.86 15 22 H 0.05 2.00 6.24 -2.39 -0.01 1.99 15 23 H 0.27 15.59 8.31 -92.71 -0.77 14.82 15 24 H 0.10 3.30 7.89 -2.39 -0.02 3.28 15 25 H 0.08 3.10 7.92 -2.39 -0.02 3.08 15 26 H 0.15 3.51 8.06 -2.91 -0.02 3.49 15 27 H 0.17 3.04 8.06 -2.91 -0.02 3.01 15 28 H 0.14 3.98 8.06 -2.91 -0.02 3.96 15 Total: -1.00 -63.20 250.86 4.64 -58.55 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.02 Total: 3.53 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 2.31 Total: -37.26 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.30 Total: -57.03 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.59 Total: -15.79 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 1.68 Total: 49.37 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -0.08 Total: -1.37 kcal Total: -63.20 4.64 -58.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260299818.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.353 kcal (2) G-P(sol) polarization free energy of solvation -63.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds