Wall clock time and date at job start Mon Mar 30 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00104 * 2 1 4 4 H 1.48500 * 109.46953 * 239.99967 * 3 2 1 5 5 H 1.48500 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47325 * 119.99990 * 3 2 1 7 7 C 1.37882 * 120.00299 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00465 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99541 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47218 * 179.97438 * 9 7 2 11 11 C 1.38963 * 120.00732 * 89.99234 * 10 9 7 12 12 O 1.34827 * 133.36979 * 359.97438 * 11 10 9 13 13 C 1.34503 * 110.89154 * 179.97438 * 12 11 10 14 14 C 1.33953 * 110.13646 * 0.24570 * 13 12 11 15 15 C 1.40415 * 119.35657 * 179.97438 * 11 10 9 16 16 C 1.39609 * 120.18654 * 0.02562 * 15 11 10 17 17 F 1.35102 * 120.20657 * 179.97438 * 16 15 11 18 18 C 1.37917 * 119.59146 * 0.02562 * 16 15 11 19 19 C 1.38017 * 120.00596 * 270.02254 * 10 9 7 20 20 F 1.35103 * 119.67429 * 359.97438 * 19 10 9 21 21 H 0.97005 * 120.00387 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47620 * 59.99264 * 9 7 2 23 23 H 1.09005 * 109.47171 * 299.99872 * 9 7 2 24 24 H 1.08002 * 124.92923 * 179.97438 * 13 12 11 25 25 H 1.07996 * 126.90900 * 179.72871 * 14 13 12 26 26 H 1.08010 * 119.88858 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6820 -4.1728 1.2039 12 8 2.4318 -3.8792 2.4958 13 6 3.1245 -4.6906 3.3149 14 6 3.8631 -5.5480 2.5982 15 6 3.5939 -5.2404 1.1880 16 6 4.0410 -5.7636 -0.0267 17 9 4.9188 -6.7905 -0.0425 18 6 3.5818 -5.2251 -1.2105 19 6 2.6791 -4.1690 -1.1947 20 9 2.2359 -3.6506 -2.3609 21 1 -0.4851 0.8401 0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8903 24 1 3.0934 -4.6531 4.3938 25 1 4.5230 -6.3126 2.9806 26 1 3.9242 -5.6264 -2.1530 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260313531.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:44 Heat of formation + Delta-G solvation = -86.681186 kcal Electronic energy + Delta-G solvation = -16266.864688 eV Core-core repulsion = 13140.149675 eV Total energy + Delta-G solvation = -3126.715014 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.03472 -49.94889 -43.46469 -38.69449 -35.63305 -33.83718 -32.42549 -30.23404 -28.75255 -25.52073 -24.16748 -23.34728 -21.69831 -19.47137 -18.91056 -18.64728 -17.79027 -17.40614 -16.91358 -16.66887 -16.51260 -16.31016 -15.77013 -15.50404 -14.87804 -14.42989 -14.05753 -13.68140 -13.34290 -13.23727 -13.01177 -12.59955 -12.53197 -12.46602 -11.71903 -11.68763 -10.90502 -10.64704 -9.78452 -9.01776 -8.23805 -6.38839 -0.36351 -0.01332 1.33729 1.38571 1.41322 1.49559 1.73867 2.25003 2.41014 2.82446 3.06481 3.32653 3.37105 3.69667 3.76138 4.02810 4.40146 4.52042 4.68544 4.73053 4.89275 4.93243 5.20239 5.41596 5.47024 5.55552 5.65083 6.02977 6.11202 6.70063 7.29419 8.85314 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.008388 C = 0.007161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.718506 B = 3337.476096 C = 3909.047459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.065 3.935 10 C -0.099 4.099 11 C 0.085 3.915 12 O -0.203 6.203 13 C 0.018 3.982 14 C -0.206 4.206 15 C -0.182 4.182 16 C 0.153 3.847 17 F -0.121 7.121 18 C -0.185 4.185 19 C 0.124 3.876 20 F -0.131 7.131 21 H 0.268 0.732 22 H 0.012 0.988 23 H 0.010 0.990 24 H 0.260 0.740 25 H 0.195 0.805 26 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 -11.488 4.402 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.028 3.972 10 C -0.101 4.101 11 C 0.036 3.964 12 O -0.103 6.103 13 C -0.046 4.046 14 C -0.225 4.225 15 C -0.184 4.184 16 C 0.133 3.867 17 F -0.100 7.100 18 C -0.204 4.204 19 C 0.104 3.896 20 F -0.109 7.109 21 H 0.077 0.923 22 H 0.030 0.970 23 H 0.028 0.972 24 H 0.275 0.725 25 H 0.212 0.788 26 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 8.170 -11.190 4.432 14.546 hybrid contribution 0.080 0.822 -0.395 0.915 sum 8.249 -10.368 4.037 13.851 Atomic orbital electron populations 1.70059 1.07666 1.28262 1.50571 1.25904 0.95809 1.03084 0.94147 0.85477 0.78380 0.77881 0.79225 1.19251 1.20139 1.19111 1.21231 0.92898 0.91011 1.52079 0.92913 1.17906 0.92467 0.90187 0.96651 1.19333 1.02254 0.99411 0.89055 1.18670 0.97868 0.95766 0.84075 1.84154 1.59237 1.52914 1.14022 1.25086 0.92159 0.89399 0.97955 1.22743 1.06434 1.05375 0.87912 1.20213 1.02582 0.99952 0.95676 1.16240 0.91554 0.87603 0.91303 1.91500 1.65773 1.55456 1.97251 1.20926 1.01091 0.98540 0.99838 1.16627 0.97596 0.95112 0.80252 1.91487 1.88010 1.86138 1.45268 0.92318 0.96989 0.97163 0.72458 0.78757 0.80199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.17 15 2 C 0.01 0.55 5.46 84.66 0.46 1.01 15 3 Si 0.97 44.76 29.54 68.60 2.03 46.79 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 7 C -0.53 -31.41 9.09 25.60 0.23 -31.17 15 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 15 9 C 0.06 3.60 4.92 29.10 0.14 3.75 15 10 C -0.10 -4.57 5.09 -19.74 -0.10 -4.67 15 11 C 0.08 3.46 7.07 22.97 0.16 3.62 15 12 O -0.20 -7.68 10.58 -9.65 -0.10 -7.78 15 13 C 0.02 0.44 11.96 66.84 0.80 1.23 15 14 C -0.21 -5.10 11.14 23.54 0.26 -4.83 15 15 C -0.18 -6.09 6.38 -20.17 -0.13 -6.22 15 16 C 0.15 4.78 7.34 22.52 0.17 4.94 15 17 F -0.12 -3.34 17.28 44.97 0.78 -2.56 15 18 C -0.18 -5.93 9.99 22.36 0.22 -5.70 15 19 C 0.12 5.05 7.23 22.39 0.16 5.21 15 20 F -0.13 -5.63 16.43 44.97 0.74 -4.90 15 21 H 0.27 15.25 8.31 -92.70 -0.77 14.48 15 22 H 0.01 0.70 7.61 -2.39 -0.02 0.68 15 23 H 0.01 0.60 8.09 -2.38 -0.02 0.58 15 24 H 0.26 3.19 8.06 -2.91 -0.02 3.17 15 25 H 0.20 3.23 8.06 -2.91 -0.02 3.21 15 26 H 0.18 4.47 8.06 -2.91 -0.02 4.44 15 Total: -1.00 -69.22 250.02 7.33 -61.89 By element: Atomic # 1 Polarization: -5.66 SS G_CDS: 1.22 Total: -4.44 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 2.38 Total: -32.84 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.28 Total: -56.17 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.10 Total: -7.78 kcal Atomic # 9 Polarization: -8.97 SS G_CDS: 1.52 Total: -7.45 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.22 7.33 -61.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313531.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.791 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds