Wall clock time and date at job start Mon Mar 30 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99918 * 3 2 1 5 5 H 1.48498 * 109.46805 * 30.00090 * 3 2 1 6 6 H 1.48494 * 109.47357 * 149.99756 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.38548 * 119.98917 * 90.00047 * 11 10 9 13 13 C 1.39259 * 119.84835 * 179.97438 * 12 11 10 14 14 C 1.38528 * 119.87009 * 0.03038 * 13 12 11 15 15 C 1.38237 * 120.06083 * 359.97438 * 14 13 12 16 16 C 1.38419 * 119.99519 * 269.72691 * 11 10 9 17 17 F 1.35098 * 119.95406 * 0.02562 * 16 11 10 18 18 O 1.36551 * 108.62755 * 180.02562 * 13 12 11 19 19 C 1.43980 * 105.48013 * 342.71134 * 18 13 12 20 20 O 1.36503 * 131.50917 * 0.02562 * 12 11 10 21 21 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 26 26 H 1.07997 * 119.97315 * 179.97438 * 14 13 12 27 27 H 1.08003 * 119.94291 * 180.02562 * 15 14 13 28 28 H 1.09003 * 110.57568 * 268.56667 * 19 18 13 29 29 H 1.09009 * 110.57613 * 145.69045 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 6 1.1447 -5.5674 -1.1985 13 6 0.4488 -6.7736 -1.1945 14 6 0.1056 -7.3681 0.0087 15 6 0.4538 -6.7654 1.2031 16 6 1.1507 -5.5691 1.2002 17 9 1.4938 -4.9854 2.3693 18 8 0.2291 -7.1547 -2.4872 19 6 0.4369 -5.9695 -3.2779 20 8 1.3613 -5.1928 -2.4932 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8904 24 1 2.8716 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 -0.4344 -8.3034 0.0138 27 1 0.1856 -7.2307 2.1400 28 1 -0.5003 -5.4292 -3.4118 29 1 0.8744 -6.2247 -4.2431 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260324647.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:24 Heat of formation + Delta-G solvation = -92.544289 kcal Electronic energy + Delta-G solvation = -16566.072454 eV Core-core repulsion = 13562.563502 eV Total energy + Delta-G solvation = -3003.508952 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.54757 -42.00240 -37.61382 -36.20161 -34.00027 -32.05820 -29.49799 -28.89409 -25.67048 -25.18607 -22.81316 -22.34480 -20.39504 -18.31964 -17.58653 -17.41205 -16.48999 -16.22905 -15.37527 -15.05995 -14.73599 -14.45618 -14.12569 -13.38404 -13.28986 -12.88678 -12.76878 -12.60423 -12.22332 -12.12150 -11.43092 -10.93854 -10.91597 -10.53650 -10.52305 -9.87866 -9.70225 -9.12273 -8.34461 -8.27489 -7.87336 -5.99179 -4.01836 1.16246 1.28880 2.83358 3.33305 3.39134 3.43041 3.51428 3.63216 4.45557 4.51492 4.61546 4.79842 4.95528 5.04749 5.25598 5.31269 5.36783 5.54163 5.96508 6.08531 6.17657 6.22427 6.56104 6.59798 6.64485 6.97543 7.26034 7.66022 7.78260 7.99382 8.40037 9.03996 9.61793 11.12231 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.007011 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.434703 B = 3992.570234 C = 4639.915745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.033 3.967 10 C -0.077 4.077 11 C -0.076 4.076 12 C 0.062 3.938 13 C 0.017 3.983 14 C -0.090 4.090 15 C -0.145 4.145 16 C 0.109 3.891 17 F -0.125 7.125 18 O -0.312 6.312 19 C 0.212 3.788 20 O -0.295 6.295 21 H 0.261 0.739 22 H 0.017 0.983 23 H 0.018 0.982 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.140 0.860 27 H 0.146 0.854 28 H 0.085 0.915 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 -14.531 -2.291 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.115 4.115 11 C -0.078 4.078 12 C 0.017 3.983 13 C -0.027 4.027 14 C -0.108 4.108 15 C -0.164 4.164 16 C 0.090 3.910 17 F -0.103 7.103 18 O -0.228 6.228 19 C 0.100 3.900 20 O -0.211 6.211 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.037 0.963 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.158 0.842 27 H 0.164 0.836 28 H 0.103 0.897 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.298 -14.432 -2.456 14.643 hybrid contribution 0.327 1.101 -0.103 1.153 sum 0.029 -13.332 -2.558 13.575 Atomic orbital electron populations 1.69970 1.06088 1.26622 1.50752 1.25013 0.94849 0.99251 0.95247 0.86565 0.79867 0.83332 0.78086 1.20666 1.21204 1.19794 1.21203 0.93081 0.90759 1.50748 0.92495 1.19048 0.93557 0.90336 0.97472 1.20778 0.98619 0.89811 1.02266 1.19338 1.01995 0.98505 0.87925 1.19176 0.99785 0.93756 0.85568 1.19770 1.02197 0.94775 0.85941 1.19657 1.02396 1.01408 0.87374 1.20796 1.01543 0.95364 0.98703 1.16974 1.00415 0.92757 0.80896 1.91521 1.90193 1.83899 1.44729 1.87316 1.87545 1.33637 1.14347 1.25646 0.93207 0.78022 0.93104 1.87433 1.57148 1.62508 1.13999 0.92983 0.96441 0.96336 0.91315 0.91319 0.84236 0.83615 0.89733 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 6 H -0.27 -6.56 7.11 56.52 0.40 -6.15 15 7 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 15 9 C 0.03 0.88 4.95 -27.89 -0.14 0.75 15 10 C -0.08 -1.72 5.10 -27.88 -0.14 -1.86 15 11 C -0.08 -1.48 5.15 -104.44 -0.54 -2.02 15 12 C 0.06 1.13 6.81 -39.09 -0.27 0.86 15 13 C 0.02 0.27 7.15 -39.10 -0.28 -0.01 15 14 C -0.09 -1.19 10.06 -39.47 -0.40 -1.58 15 15 C -0.15 -1.99 10.02 -39.50 -0.40 -2.38 15 16 C 0.11 1.90 7.24 -39.44 -0.29 1.62 15 17 F -0.13 -2.30 16.46 2.25 0.04 -2.26 15 18 O -0.31 -4.49 11.41 -45.86 -0.52 -5.01 15 19 C 0.21 2.72 8.89 101.05 0.90 3.62 15 20 O -0.30 -5.20 11.39 -45.70 -0.52 -5.72 15 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 22 H 0.02 0.50 8.14 -51.93 -0.42 0.07 15 23 H 0.02 0.53 8.14 -51.93 -0.42 0.10 15 24 H 0.07 1.48 7.63 -51.93 -0.40 1.09 15 25 H 0.07 1.50 8.08 -51.93 -0.42 1.09 15 26 H 0.14 1.39 8.06 -52.49 -0.42 0.97 15 27 H 0.15 1.52 8.06 -52.48 -0.42 1.10 15 28 H 0.09 0.98 8.14 -51.93 -0.42 0.55 15 29 H 0.13 1.16 8.14 -51.92 -0.42 0.74 15 LS Contribution 263.78 15.07 3.98 3.98 Total: -1.00 -32.35 263.78 -6.16 -38.51 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -2.89 Total: -5.04 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -1.95 Total: -14.78 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 0.74 Total: -26.59 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.04 Total: -10.73 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.35 -6.16 -38.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324647.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.035 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds