Wall clock time and date at job start Mon Mar 30 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00645 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99918 * 3 2 1 5 5 H 1.48498 * 109.46805 * 30.00090 * 3 2 1 6 6 H 1.48494 * 109.47357 * 149.99756 * 3 2 1 7 7 C 1.37887 * 119.99493 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 7 12 12 C 1.38548 * 119.98917 * 90.00047 * 11 10 9 13 13 C 1.39259 * 119.84835 * 179.97438 * 12 11 10 14 14 C 1.38528 * 119.87009 * 0.03038 * 13 12 11 15 15 C 1.38237 * 120.06083 * 359.97438 * 14 13 12 16 16 C 1.38419 * 119.99519 * 269.72691 * 11 10 9 17 17 F 1.35098 * 119.95406 * 0.02562 * 16 11 10 18 18 O 1.36551 * 108.62755 * 180.02562 * 13 12 11 19 19 C 1.43980 * 105.48013 * 342.71134 * 18 13 12 20 20 O 1.36503 * 131.50917 * 0.02562 * 12 11 10 21 21 H 0.96999 * 119.99718 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47328 * 59.99861 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.09000 * 109.47611 * 300.00263 * 10 9 7 26 26 H 1.07997 * 119.97315 * 179.97438 * 14 13 12 27 27 H 1.08003 * 119.94291 * 180.02562 * 15 14 13 28 28 H 1.09003 * 110.57568 * 268.56667 * 19 18 13 29 29 H 1.09009 * 110.57613 * 145.69045 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4914 -4.9673 0.0012 12 6 1.1447 -5.5674 -1.1985 13 6 0.4488 -6.7736 -1.1945 14 6 0.1056 -7.3681 0.0087 15 6 0.4538 -6.7654 1.2031 16 6 1.1507 -5.5691 1.2002 17 9 1.4938 -4.9854 2.3693 18 8 0.2291 -7.1547 -2.4872 19 6 0.4369 -5.9695 -3.2779 20 8 1.3613 -5.1928 -2.4932 21 1 -0.4850 0.8401 -0.0004 22 1 0.6245 -2.5571 -0.8897 23 1 0.6239 -2.5567 0.8904 24 1 2.8716 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 -0.4344 -8.3034 0.0138 27 1 0.1856 -7.2307 2.1400 28 1 -0.5003 -5.4292 -3.4118 29 1 0.8744 -6.2247 -4.2431 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260324647.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:24 Heat of formation + Delta-G solvation = -113.018544 kcal Electronic energy + Delta-G solvation = -16566.960284 eV Core-core repulsion = 13562.563502 eV Total energy + Delta-G solvation = -3004.396782 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.92055 -43.18435 -38.88098 -37.42179 -35.91382 -33.95208 -30.79811 -30.51417 -27.10924 -26.72962 -24.17260 -23.94144 -22.10569 -19.56429 -18.85710 -18.77815 -18.31360 -17.61780 -16.75704 -16.47562 -16.32096 -15.98502 -15.33940 -15.00212 -14.85306 -14.29416 -14.20626 -13.98490 -13.68098 -13.63523 -13.30404 -12.83970 -12.65321 -12.17997 -11.89732 -11.79346 -11.57876 -11.26090 -10.60193 -9.68984 -9.08088 -8.23501 -6.36088 -0.07569 0.03368 1.38265 1.40499 1.51928 1.68673 2.36395 2.41161 2.43032 3.09250 3.31585 3.34832 3.77058 3.83620 3.97972 4.02465 4.19739 4.39845 4.48335 4.67233 4.85433 4.95217 5.02443 5.07167 5.08949 5.39522 5.43201 5.60783 5.75779 6.03959 6.16661 6.78366 7.33143 8.88658 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.007011 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.434703 B = 3992.570234 C = 4639.915745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.044 3.956 10 C -0.062 4.062 11 C -0.112 4.112 12 C 0.039 3.961 13 C 0.016 3.984 14 C -0.070 4.070 15 C -0.124 4.124 16 C 0.089 3.911 17 F -0.138 7.138 18 O -0.309 6.309 19 C 0.204 3.796 20 O -0.326 6.326 21 H 0.265 0.735 22 H -0.012 1.012 23 H -0.010 1.010 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.186 0.814 27 H 0.188 0.812 28 H 0.095 0.905 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.367 -15.871 -2.363 16.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.007 3.993 10 C -0.100 4.100 11 C -0.114 4.114 12 C -0.006 4.006 13 C -0.028 4.028 14 C -0.088 4.088 15 C -0.143 4.143 16 C 0.069 3.931 17 F -0.116 7.116 18 O -0.226 6.226 19 C 0.094 3.906 20 O -0.242 6.242 21 H 0.074 0.926 22 H 0.006 0.994 23 H 0.008 0.992 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.203 0.797 27 H 0.205 0.795 28 H 0.113 0.887 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.406 -15.790 -2.536 15.998 hybrid contribution 0.290 1.426 -0.130 1.461 sum -0.116 -14.364 -2.666 14.610 Atomic orbital electron populations 1.70105 1.07899 1.27945 1.51294 1.26012 0.95815 1.03460 0.94358 0.85379 0.78647 0.78000 0.78620 1.19582 1.20418 1.18670 1.21633 0.93575 0.92056 1.51191 0.92056 1.18822 0.93743 0.92220 0.94516 1.20399 0.97611 0.90213 1.01754 1.19203 1.04248 0.98134 0.89798 1.19365 1.00699 0.95091 0.85403 1.20078 1.01613 0.93925 0.87220 1.20234 1.00547 1.02173 0.85896 1.21245 0.98968 0.93299 1.00762 1.17324 1.01708 0.94261 0.79804 1.91482 1.90532 1.84423 1.45196 1.87305 1.87400 1.34052 1.13806 1.26139 0.93498 0.77368 0.93639 1.87382 1.58601 1.63909 1.14343 0.92606 0.99396 0.99184 0.91499 0.91954 0.79706 0.79520 0.88731 0.81340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.36 13.29 21.45 0.28 -58.07 15 2 C 0.00 0.09 5.46 84.66 0.46 0.55 15 3 Si 0.97 45.38 29.54 68.60 2.03 47.41 15 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.55 -32.72 9.11 25.60 0.23 -32.48 15 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 15 9 C 0.04 2.51 4.95 29.85 0.15 2.66 15 10 C -0.06 -2.91 5.10 29.85 0.15 -2.76 15 11 C -0.11 -4.50 5.15 -19.75 -0.10 -4.60 15 12 C 0.04 1.44 6.81 22.59 0.15 1.59 15 13 C 0.02 0.48 7.15 22.58 0.16 0.64 15 14 C -0.07 -1.60 10.06 22.34 0.22 -1.37 15 15 C -0.12 -3.04 10.02 22.32 0.22 -2.81 15 16 C 0.09 3.06 7.24 22.36 0.16 3.23 15 17 F -0.14 -5.14 16.46 44.97 0.74 -4.40 15 18 O -0.31 -8.21 11.41 -76.65 -0.87 -9.08 15 19 C 0.20 4.98 8.89 113.37 1.01 5.99 15 20 O -0.33 -11.67 11.39 -76.09 -0.87 -12.53 15 21 H 0.27 15.45 8.31 -92.71 -0.77 14.68 15 22 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 15 23 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 15 24 H 0.07 3.05 7.63 -2.39 -0.02 3.03 15 25 H 0.06 2.90 8.08 -2.39 -0.02 2.88 15 26 H 0.19 2.57 8.06 -2.91 -0.02 2.55 15 27 H 0.19 3.01 8.06 -2.91 -0.02 2.98 15 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 15 29 H 0.17 2.65 8.14 -2.38 -0.02 2.63 15 Total: -1.00 -72.91 263.78 5.30 -67.61 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: 1.17 Total: -1.56 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 2.83 Total: -29.37 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.28 Total: -58.07 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -1.74 Total: -21.61 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.74 Total: -4.40 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.91 5.30 -67.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324647.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.411 kcal (2) G-P(sol) polarization free energy of solvation -72.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds