Wall clock time and date at job start Mon Mar 30 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99996 * 2 1 4 4 H 1.48496 * 109.47241 * 240.00259 * 3 2 1 5 5 H 1.48507 * 109.47188 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47144 * 119.99908 * 3 2 1 7 7 C 1.37879 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99930 * 186.00793 * 7 2 1 9 9 C 1.50703 * 119.99819 * 6.00795 * 7 2 1 10 10 H 1.09008 * 108.61066 * 335.17595 * 9 7 2 11 11 C 1.51863 * 108.65886 * 93.21184 * 9 7 2 12 12 C 1.53540 * 108.96385 * 181.21999 * 11 9 7 13 13 S 1.81615 * 107.27817 * 287.30928 * 12 11 9 14 14 C 1.76467 * 102.61089 * 46.42035 * 13 12 11 15 15 C 1.39641 * 117.70653 * 167.18746 * 14 13 12 16 16 C 1.37746 * 120.68749 * 179.54810 * 15 14 13 17 17 C 1.38312 * 119.53162 * 359.88233 * 16 15 14 18 18 C 1.37989 * 119.98022 * 0.30515 * 17 16 15 19 19 F 1.35107 * 119.49420 * 179.97438 * 18 17 16 20 20 C 1.38141 * 122.29738 * 347.10449 * 14 13 12 21 21 H 0.97001 * 120.00457 * 5.01519 * 1 2 3 22 22 H 1.09001 * 109.55831 * 301.06333 * 11 9 7 23 23 H 1.09003 * 109.55707 * 61.37621 * 11 9 7 24 24 H 1.08993 * 109.89605 * 46.75570 * 12 11 9 25 25 H 1.09009 * 109.89256 * 167.86796 * 12 11 9 26 26 H 1.07999 * 119.66140 * 359.52514 * 15 14 13 27 27 H 1.08002 * 120.23680 * 179.86881 * 16 15 14 28 28 H 1.08001 * 120.00917 * 180.28709 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0800 -1.1966 0.0984 9 6 1.2572 -2.4957 -0.1355 10 1 0.2356 -2.3485 0.2152 11 6 1.2161 -2.8812 -1.6038 12 6 0.4295 -4.1912 -1.7539 13 16 1.4779 -5.5267 -1.1092 14 6 2.0607 -4.8570 0.4158 15 6 2.6828 -5.7286 1.3121 16 6 3.1690 -5.2694 2.5164 17 6 3.0406 -3.9303 2.8375 18 6 2.4231 -3.0661 1.9565 19 9 2.3025 -1.7600 2.2804 20 6 1.9211 -3.5206 0.7364 21 1 -0.4851 0.8368 -0.0734 22 1 0.7246 -2.0931 -2.1743 23 1 2.2321 -3.0214 -1.9728 24 1 -0.4956 -4.1361 -1.1803 25 1 0.2050 -4.3706 -2.8054 26 1 2.7834 -6.7736 1.0588 27 1 3.6470 -5.9504 3.2051 28 1 3.4232 -3.5611 3.7776 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260326338.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:17 Heat of formation + Delta-G solvation = -41.294297 kcal Electronic energy + Delta-G solvation = -14922.916074 eV Core-core repulsion = 12364.382360 eV Total energy + Delta-G solvation = -2558.533714 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.44636 -39.95879 -37.00751 -34.07772 -31.69200 -31.33003 -28.98008 -25.39463 -24.09897 -23.41304 -21.33710 -18.81448 -18.77884 -17.24519 -16.92495 -16.57950 -16.26897 -16.06202 -15.54707 -14.97455 -14.26446 -14.22432 -13.95551 -13.62332 -13.46833 -13.09490 -12.94209 -12.76775 -12.50569 -12.39626 -11.81421 -11.50525 -11.13353 -10.93840 -10.56408 -10.46644 -9.34430 -8.32792 -8.15854 -6.19949 0.21338 0.39939 0.74495 1.36544 1.38524 1.42259 1.45430 2.39845 2.70039 3.12662 3.70478 3.97473 4.06323 4.07957 4.18835 4.23821 4.46493 4.57436 4.77913 4.94286 4.97576 5.19188 5.28652 5.30585 5.42275 5.48808 5.69470 5.76068 6.06121 6.22018 6.81075 7.40193 8.92037 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.011219 C = 0.008389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.100557 B = 2495.222699 C = 3336.956104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.022 3.978 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.041 0.959 9 C 0.056 3.944 10 H 0.039 0.961 11 C -0.091 4.091 12 C -0.098 4.098 13 S -0.116 6.116 14 C -0.084 4.084 15 C -0.119 4.119 16 C -0.080 4.080 17 C -0.170 4.170 18 C 0.091 3.909 19 F -0.139 7.139 20 C -0.113 4.113 21 H 0.262 0.738 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.129 0.871 26 H 0.154 0.846 27 H 0.177 0.823 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -10.945 1.314 11.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.176 4.176 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.037 3.963 10 H 0.057 0.943 11 C -0.130 4.130 12 C -0.246 4.246 13 S 0.125 5.875 14 C -0.197 4.197 15 C -0.142 4.142 16 C -0.099 4.099 17 C -0.191 4.191 18 C 0.070 3.930 19 F -0.118 7.118 20 C -0.119 4.119 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.147 0.853 26 H 0.172 0.828 27 H 0.194 0.806 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.049 -11.827 0.763 12.524 hybrid contribution -0.156 2.924 0.617 2.992 sum 3.893 -8.903 1.380 9.815 Atomic orbital electron populations 1.69980 1.07044 1.27768 1.51802 1.25488 0.95469 1.01916 0.94706 0.85826 0.78681 0.79774 0.78805 1.19264 1.20701 1.20248 1.21004 0.92502 0.91060 1.49164 0.94119 1.17569 0.96384 0.91165 0.91160 0.94314 1.21495 0.98719 0.94663 0.98118 1.23877 0.99657 0.95826 1.05205 1.84648 1.58556 1.25471 1.18780 1.21517 1.04181 0.94385 0.99604 1.21213 0.99607 0.99797 0.93609 1.21174 0.98227 0.94083 0.96414 1.21377 1.02635 0.94686 1.00419 1.18297 1.00778 0.78775 0.95173 1.91528 1.93858 1.34179 1.92189 1.20503 1.01265 0.93939 0.96198 0.92838 0.92219 0.92451 0.90137 0.85265 0.82802 0.80580 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 12.73 21.45 0.27 -54.26 15 2 C 0.02 1.27 5.45 84.66 0.46 1.73 15 3 Si 0.94 44.93 29.54 68.60 2.03 46.96 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 15 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 15 6 H -0.28 -13.17 7.11 99.48 0.71 -12.47 15 7 C -0.50 -27.84 5.21 25.60 0.13 -27.71 15 8 H 0.04 2.33 7.62 -2.91 -0.02 2.31 15 9 C 0.06 2.83 2.04 -12.87 -0.03 2.80 15 10 H 0.04 2.26 7.17 -2.38 -0.02 2.24 15 11 C -0.09 -3.96 5.04 30.40 0.15 -3.81 15 12 C -0.10 -3.40 6.53 72.16 0.47 -2.93 15 13 S -0.12 -3.82 21.99 -56.49 -1.24 -5.07 15 14 C -0.08 -3.16 6.05 22.59 0.14 -3.02 15 15 C -0.12 -3.52 9.65 22.49 0.22 -3.30 15 16 C -0.08 -2.11 10.06 22.17 0.22 -1.89 15 17 C -0.17 -5.66 10.00 22.23 0.22 -5.44 15 18 C 0.09 4.02 6.84 22.53 0.15 4.18 15 19 F -0.14 -7.15 14.16 44.97 0.64 -6.51 15 20 C -0.11 -5.09 5.52 -19.78 -0.11 -5.20 15 21 H 0.26 14.75 8.32 -92.71 -0.77 13.98 15 22 H 0.06 2.76 8.14 -2.39 -0.02 2.74 15 23 H 0.06 2.48 8.03 -2.39 -0.02 2.46 15 24 H 0.08 2.91 8.08 -2.39 -0.02 2.89 15 25 H 0.13 3.65 8.14 -2.38 -0.02 3.63 15 26 H 0.15 3.54 8.05 -2.91 -0.02 3.52 15 27 H 0.18 2.94 8.06 -2.91 -0.02 2.92 15 28 H 0.15 4.15 8.06 -2.91 -0.02 4.13 15 Total: -1.00 -63.91 251.79 4.89 -59.02 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: 1.16 Total: 4.45 kcal Atomic # 6 Polarization: -46.62 SS G_CDS: 2.04 Total: -44.59 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.27 Total: -54.26 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.64 Total: -6.51 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: -3.82 SS G_CDS: -1.24 Total: -5.07 kcal Total: -63.91 4.89 -59.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260326338.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.722 kcal (2) G-P(sol) polarization free energy of solvation -63.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds