Wall clock time and date at job start Mon Mar 30 2020 05:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00029 * 2 1 4 4 H 1.48507 * 109.47212 * 240.00250 * 3 2 1 5 5 H 1.48502 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47356 * 119.99777 * 3 2 1 7 7 C 1.37881 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47028 * 179.97438 * 9 7 2 11 11 C 1.39495 * 120.18339 * 90.00074 * 10 9 7 12 12 C 1.46785 * 134.29510 * 0.34061 * 11 10 9 13 13 C 1.34003 * 106.19578 * 180.10200 * 12 11 10 14 14 O 1.34425 * 110.13783 * 359.59542 * 13 12 11 15 15 C 1.34918 * 110.87713 * 0.27283 * 14 13 12 16 16 C 1.39126 * 133.37504 * 180.02562 * 15 14 13 17 17 F 1.35090 * 120.02353 * 359.97061 * 16 15 14 18 18 C 1.38000 * 119.94772 * 179.97438 * 16 15 14 19 19 C 1.37895 * 120.18751 * 270.02636 * 10 9 7 20 20 F 1.35104 * 119.88105 * 359.95192 * 19 10 9 21 21 H 0.96998 * 120.00492 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46611 * 60.00300 * 9 7 2 23 23 H 1.08991 * 109.47075 * 299.99990 * 9 7 2 24 24 H 1.08000 * 126.90110 * 359.96877 * 12 11 10 25 25 H 1.08002 * 124.93471 * 179.86890 * 13 12 11 26 26 H 1.07999 * 119.67282 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2304 -3.6447 0.0015 11 6 2.6871 -4.1772 1.2072 12 6 2.4281 -3.8821 2.6215 13 6 3.1740 -4.7442 3.3259 14 8 3.8607 -5.5479 2.4954 15 6 3.5997 -5.2439 1.2071 16 6 4.0420 -5.7629 -0.0056 17 9 4.9201 -6.7894 -0.0215 18 6 3.5832 -5.2281 -1.1921 19 6 2.6805 -4.1718 -1.1906 20 9 2.2411 -3.6603 -2.3613 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6248 -2.5564 0.8919 24 1 1.7704 -3.1214 3.0154 25 1 3.2140 -4.7900 4.4042 26 1 3.9291 -5.6347 -2.1310 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260342673.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:49 Heat of formation + Delta-G solvation = -86.194955 kcal Electronic energy + Delta-G solvation = -16253.549910 eV Core-core repulsion = 13126.855981 eV Total energy + Delta-G solvation = -3126.693929 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 238.055 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.06737 -49.86773 -43.44328 -38.84199 -35.49205 -33.78613 -32.27264 -30.59572 -28.68548 -25.44523 -23.84091 -23.75652 -21.57872 -19.38357 -19.07678 -18.59869 -17.80501 -17.57401 -16.95922 -16.69846 -16.46226 -16.19481 -15.76454 -15.41924 -14.44783 -14.27748 -14.20422 -13.81898 -13.49989 -13.26591 -13.07223 -12.59929 -12.49816 -12.44588 -11.65078 -11.59937 -11.02105 -10.62882 -9.66155 -9.07583 -8.22473 -6.36815 -0.35496 -0.04652 1.32079 1.39476 1.41976 1.50122 1.60606 2.26793 2.43366 2.78372 3.08010 3.22050 3.49133 3.72882 3.86693 4.08948 4.40278 4.57757 4.65812 4.68383 4.86810 5.02371 5.23468 5.37013 5.52261 5.57951 5.67457 5.99441 6.08822 6.72282 7.31363 8.86198 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.008303 C = 0.007100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.442693 B = 3371.560611 C = 3942.512453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.051 0.949 9 C 0.064 3.936 10 C -0.059 4.059 11 C -0.097 4.097 12 C -0.219 4.219 13 C 0.037 3.963 14 O -0.190 6.190 15 C -0.004 4.004 16 C 0.122 3.878 17 F -0.126 7.126 18 C -0.145 4.145 19 C 0.082 3.918 20 F -0.136 7.136 21 H 0.267 0.733 22 H 0.007 0.993 23 H 0.020 0.980 24 H 0.164 0.836 25 H 0.268 0.732 26 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 -9.987 4.535 13.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.070 0.930 9 C 0.028 3.972 10 C -0.061 4.061 11 C -0.098 4.098 12 C -0.238 4.238 13 C -0.027 4.027 14 O -0.092 6.092 15 C -0.052 4.052 16 C 0.103 3.897 17 F -0.104 7.104 18 C -0.164 4.164 19 C 0.063 3.937 20 F -0.115 7.115 21 H 0.076 0.924 22 H 0.025 0.975 23 H 0.038 0.962 24 H 0.181 0.819 25 H 0.283 0.717 26 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 7.110 -10.113 4.560 13.177 hybrid contribution -0.100 1.117 -0.454 1.209 sum 7.010 -8.997 4.107 12.122 Atomic orbital electron populations 1.70051 1.07553 1.28190 1.50660 1.25836 0.95736 1.02835 0.94278 0.85524 0.78385 0.78170 0.79170 1.19655 1.20328 1.18951 1.21183 0.92838 0.90853 1.51893 0.93027 1.17953 0.92444 0.90012 0.96835 1.20050 0.98634 0.96721 0.90663 1.19651 0.98715 0.96520 0.94914 1.22733 1.06616 1.04908 0.89557 1.24948 0.91340 0.89004 0.97421 1.84056 1.59256 1.52914 1.12929 1.19563 1.01638 0.99228 0.84783 1.15745 0.94941 0.90082 0.88977 1.91508 1.66083 1.55718 1.97098 1.20804 0.99473 0.97451 0.98685 1.17007 0.99341 0.96440 0.80925 1.91471 1.88257 1.86440 1.45321 0.92367 0.97467 0.96204 0.81871 0.71660 0.79543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.77 13.29 21.45 0.28 -54.49 15 2 C 0.01 0.68 5.46 84.66 0.46 1.15 15 3 Si 0.96 43.73 29.54 68.60 2.03 45.75 15 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 7 C -0.53 -30.06 9.09 25.60 0.23 -29.83 15 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 15 9 C 0.06 3.44 4.88 29.10 0.14 3.58 15 10 C -0.06 -2.66 5.10 -19.64 -0.10 -2.76 15 11 C -0.10 -3.80 6.15 -20.22 -0.12 -3.92 15 12 C -0.22 -7.16 10.87 23.54 0.26 -6.90 15 13 C 0.04 0.87 11.96 66.86 0.80 1.67 15 14 O -0.19 -5.64 10.59 -9.81 -0.10 -5.74 15 15 C 0.00 -0.14 7.39 23.01 0.17 0.03 15 16 C 0.12 3.94 7.31 22.43 0.16 4.11 15 17 F -0.13 -3.70 17.27 44.97 0.78 -2.92 15 18 C -0.14 -4.63 9.97 22.38 0.22 -4.41 15 19 C 0.08 3.33 7.23 22.36 0.16 3.49 15 20 F -0.14 -5.87 16.46 44.97 0.74 -5.13 15 21 H 0.27 14.85 8.31 -92.71 -0.77 14.08 15 22 H 0.01 0.41 7.64 -2.39 -0.02 0.39 15 23 H 0.02 1.09 7.92 -2.39 -0.02 1.07 15 24 H 0.16 5.30 8.06 -2.91 -0.02 5.28 15 25 H 0.27 2.95 8.06 -2.91 -0.02 2.93 15 26 H 0.19 4.53 8.06 -2.91 -0.02 4.51 15 Total: -1.00 -66.16 249.65 7.33 -58.83 By element: Atomic # 1 Polarization: -3.73 SS G_CDS: 1.22 Total: -2.51 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 2.39 Total: -33.79 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: 0.28 Total: -54.49 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.10 Total: -5.74 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 1.52 Total: -8.05 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -66.16 7.33 -58.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260342673.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.363 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds