Wall clock time and date at job start Mon Mar 30 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.66476 * 2 1 4 4 O 1.43764 * 110.75056 * 123.21562 * 2 1 3 5 5 C 1.36141 * 109.26181 * 146.18273 * 4 2 1 6 6 C 1.39262 * 129.87405 * 161.53892 * 5 4 2 7 7 C 1.38046 * 120.22974 * 179.41906 * 6 5 4 8 8 Cl 1.73604 * 119.83796 * 179.90718 * 7 6 5 9 9 C 1.38403 * 120.32316 * 0.17937 * 7 6 5 10 10 C 1.38331 * 119.75508 * 359.59683 * 9 7 6 11 11 C 1.37750 * 119.99098 * 0.60738 * 10 9 7 12 12 C 1.51652 * 132.15685 * 179.17243 * 11 10 9 13 13 H 1.09002 * 110.96972 * 313.88408 * 12 11 10 14 14 C 1.50701 * 110.94004 * 77.55713 * 12 11 10 15 15 H 1.08003 * 119.99765 * 53.10945 * 14 12 11 16 16 C 1.37872 * 120.00023 * 233.11106 * 14 12 11 17 17 N 1.31522 * 120.00159 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00136 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46993 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47286 * 120.00214 * 18 16 14 21 21 H 1.48500 * 109.47336 * 240.00203 * 18 16 14 22 22 H 1.09002 * 109.47286 * 302.83630 * 1 2 3 23 23 H 1.08999 * 109.47571 * 62.84015 * 1 2 3 24 24 H 1.09005 * 109.47219 * 182.84305 * 1 2 3 25 25 H 1.07996 * 119.88580 * 359.43595 * 6 5 4 26 26 H 1.08005 * 120.12111 * 179.85588 * 9 7 6 27 27 H 1.07997 * 120.00659 * 180.32310 * 10 9 7 28 28 H 0.97001 * 119.99778 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 8 2.0393 -0.7364 1.1247 5 6 3.1969 -1.3577 0.7678 6 6 4.2115 -1.8817 1.5649 7 6 5.3078 -2.4882 0.9852 8 17 6.5678 -3.1359 1.9885 9 6 5.4099 -2.5773 -0.3922 10 6 4.4037 -2.0631 -1.1900 11 6 3.3111 -1.4539 -0.6132 12 6 2.0820 -0.7939 -1.2076 13 1 2.3548 -0.1235 -2.0227 14 6 1.0880 -1.8266 -1.6731 15 1 0.7546 -2.5990 -0.9957 16 6 0.6044 -1.7855 -2.9635 17 7 1.0108 -0.8453 -3.7885 18 14 -0.6282 -3.0651 -3.5403 19 1 -0.9206 -4.0066 -2.4297 20 1 -1.8822 -2.3903 -3.9609 21 1 -0.0611 -3.8163 -4.6889 22 1 -0.3634 0.5572 0.8635 23 1 -0.3634 0.4691 -0.9143 24 1 -0.3634 -1.0264 0.0510 25 1 4.1403 -1.8137 2.6404 26 1 6.2702 -3.0504 -0.8424 27 1 4.4767 -2.1351 -2.2651 28 1 0.6708 -0.8166 -4.6965 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260349558.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:37 Heat of formation + Delta-G solvation = -36.340038 kcal Electronic energy + Delta-G solvation = -14636.189052 eV Core-core repulsion = 12063.453675 eV Total energy + Delta-G solvation = -2572.735377 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.95618 -38.69837 -37.12407 -35.58277 -33.15390 -31.63231 -31.05195 -28.04444 -26.19734 -23.55945 -22.40668 -21.96758 -19.05916 -18.03811 -17.43112 -16.88123 -16.47833 -16.13849 -15.14703 -14.78314 -14.56083 -14.35925 -13.94037 -13.66416 -13.43979 -12.98625 -12.83698 -12.66970 -12.42620 -12.17633 -12.04634 -11.92209 -11.55286 -11.33590 -11.07152 -10.66415 -9.70995 -9.00086 -8.19074 -6.29754 0.27294 0.39863 1.05860 1.38297 1.42736 1.52971 2.37472 2.52041 2.75835 3.07771 3.84057 4.05384 4.21563 4.23415 4.29860 4.32267 4.65719 4.67835 4.88111 5.05942 5.17986 5.21728 5.34357 5.42540 5.52338 5.62154 5.69499 5.73992 6.13133 6.34709 6.79508 7.34771 8.86417 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.031510 B = 0.007598 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.388807 B = 3684.348717 C = 4161.571095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.070 3.930 3 H 0.073 0.927 4 O -0.317 6.317 5 C 0.088 3.912 6 C -0.141 4.141 7 C -0.018 4.018 8 Cl -0.056 7.056 9 C -0.133 4.133 10 C -0.075 4.075 11 C -0.149 4.149 12 C 0.037 3.963 13 H 0.066 0.934 14 C -0.500 4.500 15 H 0.044 0.956 16 C 0.031 3.969 17 N -0.917 5.917 18 Si 0.950 3.050 19 H -0.272 1.272 20 H -0.274 1.274 21 H -0.279 1.279 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.055 0.945 25 H 0.145 0.855 26 H 0.158 0.842 27 H 0.128 0.872 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.163 -1.334 6.706 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.014 3.986 3 H 0.091 0.909 4 O -0.232 6.232 5 C 0.042 3.958 6 C -0.160 4.160 7 C -0.045 4.045 8 Cl -0.027 7.027 9 C -0.152 4.152 10 C -0.094 4.094 11 C -0.150 4.150 12 C 0.018 3.982 13 H 0.084 0.916 14 C -0.538 4.538 15 H 0.062 0.938 16 C -0.169 4.169 17 N -0.555 5.555 18 Si 0.775 3.225 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.205 1.205 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.074 0.926 25 H 0.163 0.837 26 H 0.176 0.824 27 H 0.146 0.854 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.109 -1.309 6.814 9.245 hybrid contribution -0.615 -0.529 -0.648 1.038 sum 5.494 -1.838 6.166 8.461 Atomic orbital electron populations 1.21480 0.91612 1.02469 1.01208 1.23744 0.96766 0.93829 0.84250 0.90900 1.86689 1.34301 1.62861 1.39322 1.19605 0.87652 0.95544 0.92993 1.20013 0.91711 1.03979 1.00329 1.20283 0.91266 1.01535 0.91412 1.98333 1.50472 1.84782 1.69131 1.21076 1.00529 1.02535 0.91013 1.20379 0.92095 0.96542 1.00357 1.21847 0.97212 1.01489 0.94475 1.19293 0.89608 0.95062 0.94224 0.91579 1.20809 1.23648 1.12377 0.96928 0.93764 1.25583 0.97746 0.97050 0.96555 1.69970 1.44735 1.34053 1.06720 0.85625 0.79190 0.79420 0.78239 1.19620 1.19987 1.20506 0.91709 0.91495 0.92565 0.83715 0.82439 0.85426 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 8.80 71.98 0.63 -3.74 15 2 C 0.07 2.99 4.15 31.17 0.13 3.12 15 3 H 0.07 2.89 8.14 -2.39 -0.02 2.87 15 4 O -0.32 -13.73 10.81 -95.15 -1.03 -14.76 15 5 C 0.09 3.67 7.04 22.67 0.16 3.83 15 6 C -0.14 -4.93 9.84 22.47 0.22 -4.71 15 7 C -0.02 -0.58 6.31 22.26 0.14 -0.44 15 8 Cl -0.06 -1.44 28.94 -2.72 -0.08 -1.52 15 9 C -0.13 -4.26 9.84 22.33 0.22 -4.04 15 10 C -0.08 -2.93 10.03 22.18 0.22 -2.70 15 11 C -0.15 -6.60 5.61 -19.52 -0.11 -6.71 15 12 C 0.04 1.80 3.29 -11.40 -0.04 1.76 15 13 H 0.07 3.53 7.02 -2.39 -0.02 3.51 15 14 C -0.50 -26.11 6.41 25.60 0.16 -25.95 15 15 H 0.04 2.41 7.62 -2.91 -0.02 2.38 15 16 C 0.03 1.61 5.46 84.65 0.46 2.07 15 17 N -0.92 -49.71 12.65 21.45 0.27 -49.43 15 18 Si 0.95 41.60 29.54 68.60 2.03 43.63 15 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 20 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 15 22 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.07 2.71 8.14 -2.39 -0.02 2.70 15 24 H 0.06 2.39 6.92 -2.38 -0.02 2.37 15 25 H 0.15 4.42 8.06 -2.91 -0.02 4.40 15 26 H 0.16 4.01 8.06 -2.91 -0.02 3.99 15 27 H 0.13 4.89 8.06 -2.91 -0.02 4.86 15 28 H 0.27 13.73 8.31 -92.71 -0.77 12.96 15 Total: -1.00 -55.47 258.50 4.56 -50.91 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.17 Total: 8.70 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 2.21 Total: -37.52 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.27 Total: -49.43 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -1.03 Total: -14.76 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -55.47 4.56 -50.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260349558.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.570 kcal (2) G-P(sol) polarization free energy of solvation -55.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds