Wall clock time and date at job start Mon Mar 30 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.81207 * 2 1 4 4 O 1.43777 * 110.74748 * 236.68194 * 2 1 3 5 5 C 1.36134 * 109.23965 * 213.92830 * 4 2 1 6 6 C 1.39268 * 129.87604 * 198.36736 * 5 4 2 7 7 C 1.38042 * 120.23228 * 180.98423 * 6 5 4 8 8 Cl 1.73603 * 119.84046 * 180.02562 * 7 6 5 9 9 C 1.38411 * 120.32184 * 0.04317 * 7 6 5 10 10 C 1.38329 * 119.75254 * 359.81134 * 9 7 6 11 11 C 1.37747 * 119.99446 * 359.97438 * 10 9 7 12 12 C 1.51651 * 132.15376 * 180.36333 * 11 10 9 13 13 H 1.09002 * 110.94112 * 282.78762 * 12 11 10 14 14 C 1.50702 * 110.93841 * 46.43201 * 12 11 10 15 15 H 1.07996 * 119.99856 * 65.12804 * 14 12 11 16 16 C 1.37884 * 120.00079 * 245.12638 * 14 12 11 17 17 N 1.31513 * 119.99706 * 175.23429 * 16 14 12 18 18 Si 1.86799 * 119.99853 * 355.51357 * 16 14 12 19 19 H 1.48504 * 109.46935 * 275.01847 * 18 16 14 20 20 H 1.48495 * 109.47495 * 35.01854 * 18 16 14 21 21 H 1.48493 * 109.47134 * 155.02035 * 18 16 14 22 22 H 1.09000 * 109.47194 * 296.68513 * 1 2 3 23 23 H 1.09004 * 109.47497 * 56.68320 * 1 2 3 24 24 H 1.08999 * 109.47367 * 176.68290 * 1 2 3 25 25 H 1.07997 * 119.87910 * 1.02563 * 6 5 4 26 26 H 1.08001 * 120.12228 * 179.79096 * 9 7 6 27 27 H 1.08003 * 119.99875 * 180.02562 * 10 9 7 28 28 H 0.96997 * 119.99478 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 8 2.0393 -0.7385 -1.1235 5 6 3.1955 -1.3609 -0.7643 6 6 4.2096 -1.8891 -1.5595 7 6 5.3004 -2.5033 -0.9778 8 17 6.5589 -3.1576 -1.9788 9 6 5.3954 -2.6005 0.3996 10 6 4.3933 -2.0754 1.1956 11 6 3.3063 -1.4583 0.6168 12 6 2.0784 -0.7941 1.2089 13 1 1.3568 -1.5386 1.5454 14 6 2.4576 0.1321 2.3356 15 1 3.0518 1.0113 2.1351 16 6 2.0458 -0.1429 3.6225 17 7 2.4539 0.6121 4.6190 18 14 0.9145 -1.5926 3.9514 19 1 -0.4957 -1.1778 3.7403 20 1 1.2485 -2.7019 3.0224 21 1 1.0913 -2.0504 5.3529 22 1 -0.3633 0.4615 0.9182 23 1 -0.3634 0.5645 -0.8588 24 1 -0.3634 -1.0259 -0.0595 25 1 4.1425 -1.8171 -2.6350 26 1 6.2486 -3.0848 0.8512 27 1 4.4636 -2.1487 2.2708 28 1 2.1645 0.4183 5.5243 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260349561.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:40 Heat of formation + Delta-G solvation = -37.321428 kcal Electronic energy + Delta-G solvation = -14629.162557 eV Core-core repulsion = 12056.384623 eV Total energy + Delta-G solvation = -2572.777934 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.06109 -38.75562 -37.17006 -35.56536 -33.55784 -31.77836 -31.15757 -28.66377 -25.73441 -23.62952 -22.50495 -21.90049 -19.40246 -18.47226 -17.42636 -17.00198 -16.40231 -16.05084 -15.26791 -14.87932 -14.67299 -14.56787 -14.26043 -13.91562 -13.59470 -13.13765 -12.87175 -12.52245 -12.47381 -12.19229 -12.05366 -11.87703 -11.72375 -11.62292 -11.25524 -10.74831 -9.75058 -9.04621 -8.35482 -6.42268 0.19477 0.33913 1.01605 1.33371 1.35873 1.44361 2.29038 2.40237 2.68673 2.95547 3.74606 3.96001 4.06323 4.15550 4.18721 4.23086 4.48566 4.62204 4.77411 4.81901 4.92336 5.12418 5.16644 5.25363 5.31135 5.39040 5.59211 5.66184 6.17150 6.23762 6.62640 7.23350 8.80273 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.008324 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.025480 B = 3362.990683 C = 3951.696118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.076 3.924 3 H 0.073 0.927 4 O -0.315 6.315 5 C 0.090 3.910 6 C -0.138 4.138 7 C -0.014 4.014 8 Cl -0.053 7.053 9 C -0.135 4.135 10 C -0.068 4.068 11 C -0.158 4.158 12 C 0.018 3.982 13 H 0.068 0.932 14 C -0.505 4.505 15 H 0.035 0.965 16 C 0.030 3.970 17 N -0.936 5.936 18 Si 0.931 3.069 19 H -0.254 1.254 20 H -0.253 1.253 21 H -0.285 1.285 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.150 0.850 26 H 0.158 0.842 27 H 0.125 0.875 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -7.343 -10.010 12.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.020 3.980 3 H 0.091 0.909 4 O -0.230 6.230 5 C 0.045 3.955 6 C -0.157 4.157 7 C -0.041 4.041 8 Cl -0.024 7.024 9 C -0.153 4.153 10 C -0.087 4.087 11 C -0.160 4.160 12 C -0.001 4.001 13 H 0.085 0.915 14 C -0.542 4.542 15 H 0.053 0.947 16 C -0.169 4.169 17 N -0.574 5.574 18 Si 0.755 3.245 19 H -0.178 1.178 20 H -0.177 1.177 21 H -0.211 1.211 22 H 0.098 0.902 23 H 0.101 0.899 24 H 0.085 0.915 25 H 0.168 0.832 26 H 0.175 0.825 27 H 0.143 0.857 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.364 -7.344 -10.107 12.568 hybrid contribution -0.177 -0.119 0.744 0.774 sum 1.187 -7.463 -9.362 12.032 Atomic orbital electron populations 1.21787 0.90623 1.03323 1.03629 1.23732 0.96848 0.94884 0.82514 0.90922 1.86700 1.34257 1.62709 1.39311 1.19584 0.87790 0.95480 0.92686 1.20046 0.91491 1.03597 1.00569 1.20323 0.91366 1.01036 0.91362 1.98341 1.50542 1.84428 1.69124 1.21110 1.00399 1.02642 0.91171 1.20400 0.92012 0.95900 1.00376 1.21759 0.99359 1.00608 0.94225 1.19610 0.91503 0.94542 0.94426 0.91456 1.20718 1.33632 1.08560 0.91305 0.94671 1.25831 0.96913 0.98717 0.95486 1.70017 1.45552 1.41373 1.00470 0.85969 0.80529 0.80426 0.77594 1.17825 1.17730 1.21057 0.90235 0.89926 0.91507 0.83215 0.82475 0.85689 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 9.58 71.98 0.69 -3.71 15 2 C 0.08 3.02 3.79 31.17 0.12 3.14 15 3 H 0.07 3.04 7.91 -2.39 -0.02 3.02 15 4 O -0.31 -12.37 10.81 -95.07 -1.03 -13.40 15 5 C 0.09 3.54 7.04 22.67 0.16 3.70 15 6 C -0.14 -4.54 9.84 22.47 0.22 -4.32 15 7 C -0.01 -0.43 6.31 22.26 0.14 -0.29 15 8 Cl -0.05 -1.32 28.94 -2.72 -0.08 -1.40 15 9 C -0.13 -4.29 9.84 22.33 0.22 -4.07 15 10 C -0.07 -2.66 9.92 22.18 0.22 -2.44 15 11 C -0.16 -6.76 5.68 -19.52 -0.11 -6.87 15 12 C 0.02 0.81 2.51 -11.41 -0.03 0.78 15 13 H 0.07 3.01 4.52 -2.39 -0.01 3.00 15 14 C -0.50 -27.08 8.83 25.60 0.23 -26.86 15 15 H 0.03 2.14 8.06 -2.91 -0.02 2.11 15 16 C 0.03 1.62 5.47 84.66 0.46 2.09 15 17 N -0.94 -54.91 13.96 21.45 0.30 -54.61 15 18 Si 0.93 40.89 27.20 68.60 1.87 42.75 15 19 H -0.25 -10.43 7.11 99.48 0.71 -9.72 15 20 H -0.25 -10.60 6.47 99.48 0.64 -9.95 15 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 22 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 23 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 25 H 0.15 4.20 8.06 -2.91 -0.02 4.18 15 26 H 0.16 4.04 8.06 -2.91 -0.02 4.01 15 27 H 0.13 4.96 8.06 -2.91 -0.02 4.94 15 28 H 0.27 14.81 8.31 -92.71 -0.77 14.04 15 Total: -1.00 -59.33 257.78 4.48 -54.85 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.10 Total: 10.66 kcal Atomic # 6 Polarization: -41.17 SS G_CDS: 2.32 Total: -38.85 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.30 Total: -54.61 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.03 Total: -13.40 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 1.87 Total: 42.75 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -59.33 4.48 -54.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260349561.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.525 kcal (2) G-P(sol) polarization free energy of solvation -59.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds