Wall clock time and date at job start Mon Mar 30 2020 05:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 110.66381 * 2 1 4 4 O 1.43760 * 110.90536 * 236.67966 * 2 1 3 5 5 C 1.36128 * 109.28756 * 214.04290 * 4 2 1 6 6 C 1.39269 * 129.86354 * 198.54036 * 5 4 2 7 7 C 1.38042 * 120.23230 * 180.43523 * 6 5 4 8 8 Cl 1.73604 * 119.83996 * 179.97438 * 7 6 5 9 9 C 1.38404 * 120.32481 * 0.02562 * 7 6 5 10 10 C 1.38322 * 119.75233 * 359.80132 * 9 7 6 11 11 C 1.37757 * 119.99544 * 0.02562 * 10 9 7 12 12 C 1.51647 * 132.16386 * 180.37346 * 11 10 9 13 13 H 1.09004 * 110.93935 * 46.15659 * 12 11 10 14 14 C 1.50697 * 110.94118 * 282.46398 * 12 11 10 15 15 H 1.07999 * 120.00341 * 252.83382 * 14 12 11 16 16 C 1.37882 * 119.99976 * 72.83460 * 14 12 11 17 17 N 1.31511 * 120.00275 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00069 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47194 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47287 * 119.99777 * 18 16 14 21 21 H 1.48499 * 109.47209 * 239.99896 * 18 16 14 22 22 H 1.09000 * 109.47570 * 289.11497 * 1 2 3 23 23 H 1.08999 * 109.47115 * 49.11764 * 1 2 3 24 24 H 1.09004 * 109.47275 * 169.11991 * 1 2 3 25 25 H 1.07998 * 119.88463 * 0.41888 * 6 5 4 26 26 H 1.08007 * 120.12486 * 179.82116 * 9 7 6 27 27 H 1.08004 * 120.00890 * 180.02562 * 10 9 7 28 28 H 0.96998 * 120.00441 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 8 2.0429 -0.7377 -1.1222 5 6 3.1980 -1.3608 -0.7606 6 6 4.2153 -1.8854 -1.5539 7 6 5.3097 -2.4913 -0.9700 8 17 6.5717 -3.1424 -1.9686 9 6 5.4052 -2.5832 0.4077 10 6 4.4001 -2.0611 1.2018 11 6 3.3091 -1.4530 0.6208 12 6 2.0773 -0.7938 1.2104 13 1 2.3472 -0.1224 2.0256 14 6 1.0827 -1.8271 1.6731 15 1 0.1731 -1.9896 1.1139 16 6 1.3340 -2.5651 2.8104 17 7 2.4418 -2.3676 3.4910 18 14 0.1009 -3.8454 3.3843 19 1 -1.0545 -3.8731 2.4517 20 1 0.7494 -5.1811 3.4094 21 1 -0.3731 -3.4996 4.7485 22 1 -0.3634 0.3365 0.9710 23 1 -0.3633 0.6726 -0.7770 24 1 -0.3634 -1.0092 -0.1940 25 1 4.1478 -1.8182 -2.6297 26 1 6.2615 -3.0605 0.8610 27 1 4.4706 -2.1302 2.2773 28 1 2.6184 -2.8865 4.2913 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260349563.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:43 Heat of formation + Delta-G solvation = -32.332086 kcal Electronic energy + Delta-G solvation = -14780.615747 eV Core-core repulsion = 12208.054168 eV Total energy + Delta-G solvation = -2572.561580 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92481 -38.64442 -37.08372 -35.55459 -33.16929 -31.55787 -31.01294 -27.97661 -26.18361 -23.47869 -22.37241 -21.96655 -18.97196 -17.98926 -17.46682 -16.78707 -16.44486 -16.09461 -15.04394 -14.76182 -14.55363 -14.33398 -13.94401 -13.71525 -13.21118 -13.04955 -12.81619 -12.60021 -12.45721 -12.17391 -12.03982 -11.89380 -11.62645 -11.16073 -10.97049 -10.60448 -9.58969 -8.91652 -8.14840 -6.26029 0.37257 0.48911 1.09206 1.39897 1.44117 1.52873 2.40144 2.54814 2.83695 3.15600 3.97498 4.08705 4.16116 4.24023 4.32011 4.36022 4.63913 4.80036 4.91895 5.04630 5.17161 5.28444 5.35498 5.43409 5.50911 5.74374 5.80857 5.91053 6.14720 6.38120 6.80199 7.40528 8.90890 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025154 B = 0.009106 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.870499 B = 3074.103822 C = 3799.165750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.073 3.927 3 H 0.083 0.917 4 O -0.315 6.315 5 C 0.084 3.916 6 C -0.146 4.146 7 C -0.020 4.020 8 Cl -0.060 7.060 9 C -0.146 4.146 10 C -0.066 4.066 11 C -0.130 4.130 12 C 0.049 3.951 13 H 0.035 0.965 14 C -0.520 4.520 15 H 0.072 0.928 16 C 0.024 3.976 17 N -0.904 5.904 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.278 1.278 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.054 0.946 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.131 0.869 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 1.482 -6.321 7.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.018 3.982 3 H 0.101 0.899 4 O -0.230 6.230 5 C 0.038 3.962 6 C -0.165 4.165 7 C -0.047 4.047 8 Cl -0.031 7.031 9 C -0.164 4.164 10 C -0.084 4.084 11 C -0.131 4.131 12 C 0.031 3.969 13 H 0.053 0.947 14 C -0.558 4.558 15 H 0.090 0.910 16 C -0.177 4.177 17 N -0.542 5.542 18 Si 0.776 3.224 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.204 1.204 22 H 0.099 0.901 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.162 0.838 26 H 0.165 0.835 27 H 0.149 0.851 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.276 1.384 -6.457 7.372 hybrid contribution -0.349 -0.824 0.726 1.152 sum 2.927 0.560 -5.732 6.460 Atomic orbital electron populations 1.21693 0.91206 1.02278 1.02706 1.23627 0.96949 0.94083 0.83578 0.89944 1.86669 1.34513 1.62809 1.39027 1.19594 0.87598 0.95943 0.93033 1.19946 0.91812 1.04548 1.00183 1.20241 0.91394 1.01903 0.91136 1.98318 1.50584 1.84777 1.69437 1.21102 1.00765 1.03265 0.91300 1.20647 0.91754 0.95155 1.00878 1.21717 0.96522 1.01173 0.93698 1.19128 0.90150 0.94393 0.93273 0.94737 1.21412 1.04665 1.20347 1.09331 0.90984 1.25648 0.96914 0.98590 0.96531 1.69981 1.25468 1.41253 1.17487 0.85618 0.79542 0.78937 0.78280 1.19162 1.21326 1.20357 0.90093 0.91046 0.92676 0.83763 0.83515 0.85110 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.27 8.48 71.98 0.61 -3.66 15 2 C 0.07 2.94 4.16 31.19 0.13 3.07 15 3 H 0.08 2.97 8.14 -2.39 -0.02 2.95 15 4 O -0.32 -13.51 10.81 -95.00 -1.03 -14.54 15 5 C 0.08 3.64 7.04 22.67 0.16 3.80 15 6 C -0.15 -5.45 9.84 22.47 0.22 -5.23 15 7 C -0.02 -0.71 6.31 22.26 0.14 -0.57 15 8 Cl -0.06 -1.71 28.94 -2.72 -0.08 -1.79 15 9 C -0.15 -5.43 9.84 22.33 0.22 -5.21 15 10 C -0.07 -2.93 9.51 22.18 0.21 -2.72 15 11 C -0.13 -6.08 5.42 -19.52 -0.11 -6.19 15 12 C 0.05 2.36 2.78 -11.39 -0.03 2.33 15 13 H 0.03 1.79 8.13 -2.38 -0.02 1.77 15 14 C -0.52 -26.72 7.80 25.60 0.20 -26.52 15 15 H 0.07 3.64 5.44 -2.91 -0.02 3.62 15 16 C 0.02 1.24 5.40 84.66 0.46 1.70 15 17 N -0.90 -48.39 11.25 21.45 0.24 -48.15 15 18 Si 0.95 41.78 29.54 68.60 2.03 43.81 15 19 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 20 H -0.29 -12.74 7.11 99.48 0.71 -12.03 15 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 22 H 0.08 2.75 8.04 -2.39 -0.02 2.73 15 23 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 24 H 0.05 2.10 6.49 -2.38 -0.02 2.08 15 25 H 0.14 4.68 8.06 -2.91 -0.02 4.66 15 26 H 0.15 4.65 8.06 -2.91 -0.02 4.63 15 27 H 0.13 6.24 6.68 -2.91 -0.02 6.22 15 28 H 0.26 13.46 8.31 -92.71 -0.77 12.69 15 Total: -1.00 -55.06 253.93 4.55 -50.51 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 1.18 Total: 9.36 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 2.21 Total: -39.19 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.24 Total: -48.15 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -1.03 Total: -14.54 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -55.06 4.55 -50.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260349563.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.181 kcal (2) G-P(sol) polarization free energy of solvation -55.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds