Wall clock time and date at job start Mon Mar 30 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.80650 * 2 1 4 4 O 1.43774 * 110.74758 * 123.31158 * 2 1 3 5 5 C 1.36136 * 109.23652 * 90.58095 * 4 2 1 6 6 C 1.39268 * 129.87744 * 198.41314 * 5 4 2 7 7 C 1.38044 * 120.23115 * 181.01756 * 6 5 4 8 8 Cl 1.73601 * 119.83517 * 179.97438 * 7 6 5 9 9 C 1.38402 * 120.32568 * 359.95833 * 7 6 5 10 10 C 1.38327 * 119.75078 * 359.84617 * 9 7 6 11 11 C 1.37752 * 119.99751 * 0.02562 * 10 9 7 12 12 C 1.51652 * 132.15476 * 180.36127 * 11 10 9 13 13 H 1.08995 * 110.93708 * 46.38497 * 12 11 10 14 14 C 1.50702 * 110.93444 * 282.73693 * 12 11 10 15 15 H 1.07995 * 120.00323 * 324.81931 * 14 12 11 16 16 C 1.37875 * 119.99578 * 144.81213 * 14 12 11 17 17 N 1.31516 * 120.00042 * 186.95623 * 16 14 12 18 18 Si 1.86806 * 120.00154 * 6.96059 * 16 14 12 19 19 H 1.48495 * 109.46985 * 275.15167 * 18 16 14 20 20 H 1.48497 * 109.46922 * 35.15459 * 18 16 14 21 21 H 1.48504 * 109.46918 * 155.15530 * 18 16 14 22 22 H 1.08999 * 109.47198 * 183.31885 * 1 2 3 23 23 H 1.08997 * 109.47091 * 303.31575 * 1 2 3 24 24 H 1.08997 * 109.47492 * 63.31855 * 1 2 3 25 25 H 1.07996 * 119.88143 * 0.97429 * 6 5 4 26 26 H 1.07999 * 120.12561 * 179.87742 * 9 7 6 27 27 H 1.08004 * 119.99947 * 180.02562 * 10 9 7 28 28 H 0.96996 * 120.00497 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 8 2.0393 -0.7384 1.1236 5 6 2.2104 -2.0403 0.7644 6 6 2.3429 -3.1760 1.5596 7 6 2.5306 -4.4137 0.9779 8 17 2.6952 -5.8225 1.9789 9 6 2.5877 -4.5371 -0.3995 10 6 2.4528 -3.4139 -1.1955 11 6 2.2629 -2.1784 -0.6167 12 6 2.0784 -0.7945 -1.2089 13 1 1.3549 -0.8129 -2.0239 14 6 3.3951 -0.2279 -1.6739 15 1 4.2998 -0.4432 -1.1247 16 6 3.4449 0.5653 -2.8005 17 7 4.6063 0.9470 -3.2853 18 14 1.8625 1.0979 -3.6385 19 1 1.4169 0.0357 -4.5756 20 1 0.8124 1.3264 -2.6137 21 1 2.1005 2.3551 -4.3922 22 1 -0.3633 -1.0259 0.0595 23 1 -0.3633 0.5644 0.8588 24 1 -0.3634 0.4614 -0.9182 25 1 2.2995 -3.0878 2.6350 26 1 2.7366 -5.5068 -0.8511 27 1 2.4963 -3.5056 -2.2707 28 1 4.6413 1.5054 -4.0776 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260349565.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:46 Heat of formation + Delta-G solvation = -38.343047 kcal Electronic energy + Delta-G solvation = -14662.526345 eV Core-core repulsion = 12089.704110 eV Total energy + Delta-G solvation = -2572.822234 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.11535 -38.74313 -37.15148 -35.45448 -33.58954 -31.55122 -31.16214 -29.00130 -25.51375 -23.79506 -22.47387 -21.97541 -19.22584 -18.22031 -17.63464 -16.88753 -16.55002 -16.22350 -15.12356 -14.90445 -14.65505 -14.42998 -14.21424 -13.83850 -13.60823 -13.12183 -12.85198 -12.63111 -12.48167 -12.17895 -12.04871 -11.81738 -11.79572 -11.60866 -11.28408 -10.73776 -9.74428 -9.00928 -8.36286 -6.44228 0.21010 0.36492 1.03527 1.35454 1.37697 1.48579 2.30667 2.48319 2.68097 2.95991 3.75345 3.99760 4.00659 4.17255 4.19615 4.20988 4.48131 4.60383 4.75043 4.85501 4.90295 5.12604 5.16527 5.21404 5.32570 5.49140 5.58021 5.61231 6.15197 6.29582 6.61334 7.20918 8.80024 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.035288 B = 0.007656 C = 0.006977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.285138 B = 3656.379383 C = 4012.148217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.064 3.936 3 H 0.102 0.898 4 O -0.314 6.314 5 C 0.095 3.905 6 C -0.144 4.144 7 C -0.014 4.014 8 Cl -0.055 7.055 9 C -0.134 4.134 10 C -0.072 4.072 11 C -0.151 4.151 12 C 0.030 3.970 13 H 0.070 0.930 14 C -0.514 4.514 15 H 0.022 0.978 16 C 0.021 3.979 17 N -0.940 5.940 18 Si 0.939 3.061 19 H -0.260 1.260 20 H -0.230 1.230 21 H -0.286 1.286 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.145 0.855 26 H 0.161 0.839 27 H 0.139 0.861 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.683 -8.684 5.670 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.008 3.992 3 H 0.120 0.880 4 O -0.229 6.229 5 C 0.049 3.951 6 C -0.163 4.163 7 C -0.041 4.041 8 Cl -0.026 7.026 9 C -0.153 4.153 10 C -0.090 4.090 11 C -0.152 4.152 12 C 0.011 3.989 13 H 0.088 0.912 14 C -0.551 4.551 15 H 0.040 0.960 16 C -0.178 4.178 17 N -0.578 5.578 18 Si 0.761 3.239 19 H -0.185 1.185 20 H -0.153 1.153 21 H -0.212 1.212 22 H 0.079 0.921 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.163 0.837 26 H 0.179 0.821 27 H 0.157 0.843 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.533 -8.579 5.838 14.091 hybrid contribution 0.208 0.535 -0.555 0.798 sum -9.326 -8.044 5.283 13.401 Atomic orbital electron populations 1.22237 0.92924 1.02985 1.03730 1.24020 0.94730 0.96333 0.84156 0.88006 1.86742 1.80336 1.16483 1.39294 1.19604 0.96963 0.85537 0.92948 1.20043 1.07726 0.88122 1.00458 1.20344 1.04591 0.87544 0.91602 1.98341 1.96215 1.38769 1.69291 1.21109 1.03327 0.99899 0.90943 1.20479 0.97539 0.90106 1.00914 1.21459 1.02606 0.96781 0.94381 1.19415 0.96171 0.88284 0.95036 0.91221 1.20765 0.92385 1.31007 1.10949 0.95987 1.26010 0.99992 0.95048 0.96746 1.70052 1.27291 1.36836 1.23619 0.85868 0.80000 0.78319 0.79701 1.18499 1.15311 1.21238 0.92080 0.90320 0.90013 0.83731 0.82129 0.84314 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.51 71.98 0.68 -4.29 15 2 C 0.06 2.55 3.85 31.18 0.12 2.67 15 3 H 0.10 4.26 7.92 -2.39 -0.02 4.24 15 4 O -0.31 -13.28 10.82 -95.09 -1.03 -14.30 15 5 C 0.10 3.82 6.90 22.68 0.16 3.98 15 6 C -0.14 -4.87 9.84 22.47 0.22 -4.65 15 7 C -0.01 -0.43 6.31 22.26 0.14 -0.29 15 8 Cl -0.06 -1.36 28.94 -2.72 -0.08 -1.44 15 9 C -0.13 -4.01 9.84 22.33 0.22 -3.79 15 10 C -0.07 -2.57 10.03 22.18 0.22 -2.35 15 11 C -0.15 -6.28 5.60 -19.52 -0.11 -6.39 15 12 C 0.03 1.34 2.17 -11.40 -0.02 1.31 15 13 H 0.07 2.93 5.51 -2.39 -0.01 2.92 15 14 C -0.51 -28.58 8.90 25.60 0.23 -28.35 15 15 H 0.02 1.42 8.06 -2.91 -0.02 1.39 15 16 C 0.02 1.16 5.47 84.65 0.46 1.62 15 17 N -0.94 -56.70 13.96 21.45 0.30 -56.40 15 18 Si 0.94 40.09 26.86 68.60 1.84 41.94 15 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 20 H -0.23 -8.59 6.49 99.48 0.65 -7.94 15 21 H -0.29 -12.25 7.11 99.48 0.71 -11.55 15 22 H 0.06 1.81 8.07 -2.39 -0.02 1.79 15 23 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.08 2.33 7.53 -2.39 -0.02 2.31 15 25 H 0.14 4.29 8.06 -2.91 -0.02 4.27 15 26 H 0.16 3.73 8.06 -2.91 -0.02 3.71 15 27 H 0.14 4.58 8.06 -2.91 -0.02 4.56 15 28 H 0.27 15.14 8.31 -92.71 -0.77 14.37 15 Total: -1.00 -62.91 257.42 4.46 -58.45 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.11 Total: 12.27 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 2.32 Total: -40.52 kcal Atomic # 7 Polarization: -56.70 SS G_CDS: 0.30 Total: -56.40 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -1.03 Total: -14.30 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.84 Total: 41.94 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -62.91 4.46 -58.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260349565.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.106 kcal (2) G-P(sol) polarization free energy of solvation -62.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds