Wall clock time and date at job start Mon Mar 30 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32629 * 125.17540 * 2 1 4 4 C 1.40119 * 115.63100 * 180.02562 * 3 2 1 5 5 C 1.33820 * 113.71314 * 359.96410 * 4 3 2 6 6 S 1.75585 * 125.17162 * 180.02562 * 2 1 3 7 7 C 1.52109 * 110.67993 * 180.02562 * 5 4 3 8 8 O 1.42901 * 110.36438 * 258.54257 * 7 5 4 9 9 C 1.50706 * 110.36331 * 136.23080 * 7 5 4 10 10 H 1.07995 * 119.99716 * 125.44431 * 9 7 5 11 11 C 1.37876 * 119.99677 * 305.44104 * 9 7 5 12 12 N 1.31516 * 119.99770 * 188.90060 * 11 9 7 13 13 Si 1.86793 * 120.00247 * 8.90114 * 11 9 7 14 14 H 1.48499 * 109.47302 * 84.54371 * 13 11 9 15 15 H 1.48507 * 109.47214 * 204.54058 * 13 11 9 16 16 H 1.48500 * 109.47415 * 324.53982 * 13 11 9 17 17 C 1.54210 * 104.84522 * 17.38787 * 7 5 4 18 18 H 1.09001 * 110.97853 * 91.63243 * 17 7 5 19 19 C 1.52996 * 110.98020 * 215.41859 * 17 7 5 20 20 C 1.52799 * 136.53724 * 179.91232 * 4 3 2 21 21 H 1.09000 * 109.47197 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46603 * 299.96985 * 1 2 3 23 23 H 1.08998 * 109.47301 * 59.96982 * 1 2 3 24 24 H 1.08000 * 122.18230 * 0.03953 * 3 2 1 25 25 H 0.96695 * 114.00237 * 298.54523 * 8 7 5 26 26 H 0.96998 * 120.00231 * 180.02562 * 12 11 9 27 27 H 1.08997 * 109.47448 * 59.99583 * 19 17 7 28 28 H 1.08996 * 109.47429 * 180.02562 * 19 17 7 29 29 H 1.09007 * 109.47234 * 300.00061 * 19 17 7 30 30 H 1.09004 * 110.32522 * 281.35731 * 20 4 3 31 31 H 1.08999 * 110.32671 * 43.57255 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2711 1.0841 0.0000 4 6 3.6529 0.8518 -0.0006 5 6 3.9805 -0.4457 -0.0003 6 16 2.5185 -1.4353 -0.0006 7 6 5.4917 -0.6182 -0.0003 8 8 5.9556 -0.9393 -1.3132 9 6 5.8971 -1.6911 0.9774 10 1 6.5032 -2.5216 0.6469 11 6 5.4942 -1.6123 2.2936 12 7 5.9872 -2.4460 3.1832 13 14 4.2481 -0.3214 2.8132 14 1 2.8754 -0.8290 2.5619 15 1 4.4110 -0.0304 4.2604 16 1 4.4673 0.9215 2.0307 17 6 6.0456 0.7504 0.4448 18 1 6.1784 0.7847 1.5262 19 6 7.3562 1.0718 -0.2763 20 6 4.9209 1.7044 -0.0024 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5134 0.8903 23 1 -0.3634 0.5143 -0.8897 24 1 1.8553 2.0809 0.0006 25 1 5.6005 -1.7674 -1.6642 26 1 5.7035 -2.3909 4.1091 27 1 7.1821 1.0980 -1.3519 28 1 7.7254 2.0419 0.0562 29 1 8.0951 0.3040 -0.0465 30 1 5.1221 2.0815 -1.0052 31 1 4.8223 2.5311 0.7011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260354676.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:42 Heat of formation + Delta-G solvation = -0.633944 kcal Electronic energy + Delta-G solvation = -15616.243312 eV Core-core repulsion = 13182.933068 eV Total energy + Delta-G solvation = -2433.310244 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.49393 -36.02745 -33.59671 -32.41989 -30.95855 -28.05023 -27.02367 -24.76173 -22.41967 -21.11327 -19.41471 -17.98714 -17.15202 -16.44433 -15.58931 -14.56493 -13.93732 -13.80135 -13.57715 -13.10793 -12.93704 -12.69873 -12.33688 -12.11389 -11.68931 -11.58484 -11.30535 -11.00258 -10.54505 -10.38260 -10.25686 -10.06443 -9.98919 -9.75045 -9.37850 -8.71103 -8.57502 -7.72385 -7.39589 -6.19765 -4.24578 1.63879 2.17243 2.76187 3.17835 3.34116 3.46391 3.53539 4.41891 4.96397 5.06172 5.40511 5.45713 5.53812 5.64732 5.67112 5.85480 5.93234 5.99856 6.21199 6.27039 6.28840 6.46810 6.57596 6.67371 6.87688 6.98368 7.08606 7.16221 7.25423 7.54213 8.34009 8.59345 8.89864 9.45473 10.90598 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.014608 C = 0.011945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.956496 B = 1916.247768 C = 2343.481127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.209 4.209 3 C -0.123 4.123 4 C -0.134 4.134 5 C -0.198 4.198 6 S 0.122 5.878 7 C 0.305 3.695 8 O -0.556 6.556 9 C -0.549 4.549 10 H 0.081 0.919 11 C 0.093 3.907 12 N -0.886 5.886 13 Si 0.817 3.183 14 H -0.257 1.257 15 H -0.297 1.297 16 H -0.221 1.221 17 C -0.076 4.076 18 H 0.088 0.912 19 C -0.120 4.120 20 C -0.050 4.050 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.125 0.875 25 H 0.365 0.635 26 H 0.266 0.734 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 6.598 -6.112 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.326 4.326 3 C -0.155 4.155 4 C -0.146 4.146 5 C -0.316 4.316 6 S 0.389 5.611 7 C 0.262 3.738 8 O -0.360 6.360 9 C -0.586 4.586 10 H 0.099 0.901 11 C -0.112 4.112 12 N -0.521 5.521 13 Si 0.643 3.357 14 H -0.182 1.182 15 H -0.225 1.225 16 H -0.144 1.144 17 C -0.096 4.096 18 H 0.106 0.894 19 C -0.178 4.178 20 C -0.089 4.089 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.143 0.857 25 H 0.210 0.790 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.315 5.505 -5.845 10.862 hybrid contribution -0.896 1.448 0.662 1.828 sum -8.211 6.953 -5.183 11.943 Atomic orbital electron populations 1.20188 0.88398 1.02291 1.02118 1.24097 0.99497 0.96704 1.12311 1.19422 0.91932 0.98660 1.05443 1.20460 0.93805 0.95615 1.04671 1.27304 1.02468 0.95845 1.05950 1.83905 0.95823 1.08336 1.73015 1.18354 0.79913 0.93781 0.81792 1.86342 1.72596 1.44326 1.32727 1.21423 1.34654 1.09186 0.93323 0.90081 1.24826 0.95081 0.95227 0.96074 1.69921 1.41872 1.37609 1.02739 0.88020 0.83992 0.85766 0.77945 1.18185 1.22500 1.14392 1.22172 0.93925 0.93190 1.00287 0.89402 1.21414 0.96662 0.99630 1.00061 1.21156 0.90428 0.96744 1.00563 0.91830 0.91345 0.91196 0.85694 0.78951 0.92426 0.92521 0.94307 0.92026 0.91028 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.37 36.01 0.37 -0.57 16 2 C -0.21 -3.71 6.47 -36.20 -0.23 -3.95 16 3 C -0.12 -2.27 10.02 -40.77 -0.41 -2.67 16 4 C -0.13 -2.76 4.45 -104.42 -0.47 -3.22 16 5 C -0.20 -4.38 3.70 -35.16 -0.13 -4.51 16 6 S 0.12 2.47 21.50 -107.50 -2.31 0.16 16 7 C 0.30 7.12 0.91 -91.59 -0.08 7.04 16 8 O -0.56 -12.08 11.55 -35.23 -0.41 -12.49 16 9 C -0.55 -15.12 9.08 -34.44 -0.31 -15.43 16 10 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 11 C 0.09 2.63 5.26 -17.82 -0.09 2.54 16 12 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 13 Si 0.82 20.52 22.36 -169.99 -3.80 16.72 16 14 H -0.26 -6.42 6.08 56.52 0.34 -6.08 16 15 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 16 H -0.22 -5.13 2.92 56.52 0.17 -4.96 16 17 C -0.08 -1.63 2.35 -89.41 -0.21 -1.84 16 18 H 0.09 2.04 5.20 -51.93 -0.27 1.77 16 19 C -0.12 -2.28 8.61 37.16 0.32 -1.96 16 20 C -0.05 -0.96 5.53 -26.25 -0.15 -1.10 16 21 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 25 H 0.36 7.00 9.08 45.56 0.41 7.41 16 26 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.06 1.04 7.41 -51.93 -0.38 0.65 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 30 H 0.07 1.26 7.83 -51.93 -0.41 0.86 16 31 H 0.06 1.07 7.95 -51.93 -0.41 0.66 16 LS Contribution 254.82 15.07 3.84 3.84 Total: -1.00 -30.78 254.82 -6.74 -37.52 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -3.45 Total: 5.99 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: -1.39 Total: -25.68 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.41 Total: -12.49 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -3.80 Total: 16.72 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.31 Total: 0.16 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.78 -6.74 -37.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354676.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.888 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds