Wall clock time and date at job start Mon Mar 30 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32629 * 125.17540 * 2 1 4 4 C 1.40119 * 115.63100 * 180.02562 * 3 2 1 5 5 C 1.33820 * 113.71314 * 359.96410 * 4 3 2 6 6 S 1.75585 * 125.17162 * 180.02562 * 2 1 3 7 7 C 1.52109 * 110.67993 * 180.02562 * 5 4 3 8 8 O 1.42901 * 110.36438 * 258.54257 * 7 5 4 9 9 C 1.50706 * 110.36331 * 136.23080 * 7 5 4 10 10 H 1.07995 * 119.99716 * 125.44431 * 9 7 5 11 11 C 1.37876 * 119.99677 * 305.44104 * 9 7 5 12 12 N 1.31516 * 119.99770 * 188.90060 * 11 9 7 13 13 Si 1.86793 * 120.00247 * 8.90114 * 11 9 7 14 14 H 1.48499 * 109.47302 * 84.54371 * 13 11 9 15 15 H 1.48507 * 109.47214 * 204.54058 * 13 11 9 16 16 H 1.48500 * 109.47415 * 324.53982 * 13 11 9 17 17 C 1.54210 * 104.84522 * 17.38787 * 7 5 4 18 18 H 1.09001 * 110.97853 * 91.63243 * 17 7 5 19 19 C 1.52996 * 110.98020 * 215.41859 * 17 7 5 20 20 C 1.52799 * 136.53724 * 179.91232 * 4 3 2 21 21 H 1.09000 * 109.47197 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46603 * 299.96985 * 1 2 3 23 23 H 1.08998 * 109.47301 * 59.96982 * 1 2 3 24 24 H 1.08000 * 122.18230 * 0.03953 * 3 2 1 25 25 H 0.96695 * 114.00237 * 298.54523 * 8 7 5 26 26 H 0.96998 * 120.00231 * 180.02562 * 12 11 9 27 27 H 1.08997 * 109.47448 * 59.99583 * 19 17 7 28 28 H 1.08996 * 109.47429 * 180.02562 * 19 17 7 29 29 H 1.09007 * 109.47234 * 300.00061 * 19 17 7 30 30 H 1.09004 * 110.32522 * 281.35731 * 20 4 3 31 31 H 1.08999 * 110.32671 * 43.57255 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2711 1.0841 0.0000 4 6 3.6529 0.8518 -0.0006 5 6 3.9805 -0.4457 -0.0003 6 16 2.5185 -1.4353 -0.0006 7 6 5.4917 -0.6182 -0.0003 8 8 5.9556 -0.9393 -1.3132 9 6 5.8971 -1.6911 0.9774 10 1 6.5032 -2.5216 0.6469 11 6 5.4942 -1.6123 2.2936 12 7 5.9872 -2.4460 3.1832 13 14 4.2481 -0.3214 2.8132 14 1 2.8754 -0.8290 2.5619 15 1 4.4110 -0.0304 4.2604 16 1 4.4673 0.9215 2.0307 17 6 6.0456 0.7504 0.4448 18 1 6.1784 0.7847 1.5262 19 6 7.3562 1.0718 -0.2763 20 6 4.9209 1.7044 -0.0024 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3632 0.5134 0.8903 23 1 -0.3634 0.5143 -0.8897 24 1 1.8553 2.0809 0.0006 25 1 5.6005 -1.7674 -1.6642 26 1 5.7035 -2.3909 4.1091 27 1 7.1821 1.0980 -1.3519 28 1 7.7254 2.0419 0.0562 29 1 8.0951 0.3040 -0.0465 30 1 5.1221 2.0815 -1.0052 31 1 4.8223 2.5311 0.7011 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260354676.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:42 Heat of formation + Delta-G solvation = -22.775991 kcal Electronic energy + Delta-G solvation = -15617.203463 eV Core-core repulsion = 13182.933068 eV Total energy + Delta-G solvation = -2434.270395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.11442 -37.58722 -35.22923 -34.53805 -32.33739 -29.86611 -28.42490 -26.45744 -24.12538 -22.62367 -21.09826 -19.51797 -19.12512 -18.04508 -17.43998 -16.20017 -15.61175 -15.45972 -14.96767 -14.83170 -14.52231 -14.25558 -13.76683 -13.57990 -13.34620 -13.14146 -12.93601 -12.43814 -12.35573 -12.01443 -11.92799 -11.86798 -11.50342 -11.47861 -11.18582 -10.76833 -10.49696 -9.26748 -8.97875 -8.39922 -6.47634 0.14340 0.66984 1.25358 1.34815 1.40649 1.41908 1.83288 2.34716 2.94710 3.52387 3.81107 3.89311 4.19977 4.26381 4.44772 4.62157 4.62459 4.73961 4.76766 4.85400 4.87784 5.07380 5.09211 5.19011 5.29160 5.30837 5.52117 5.64076 5.67458 5.69409 6.16338 6.51113 6.95833 7.30639 8.74019 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.014608 C = 0.011945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.956496 B = 1916.247768 C = 2343.481127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.184 4.184 3 C -0.137 4.137 4 C -0.123 4.123 5 C -0.239 4.239 6 S 0.075 5.925 7 C 0.302 3.698 8 O -0.558 6.558 9 C -0.548 4.548 10 H 0.034 0.966 11 C 0.043 3.957 12 N -0.938 5.938 13 Si 0.874 3.126 14 H -0.254 1.254 15 H -0.312 1.312 16 H -0.187 1.187 17 C -0.085 4.085 18 H 0.067 0.933 19 C -0.114 4.114 20 C -0.047 4.047 21 H 0.069 0.931 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.163 0.837 25 H 0.372 0.628 26 H 0.265 0.735 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.094 0.906 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.701 9.844 -7.108 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.301 4.301 3 C -0.167 4.167 4 C -0.135 4.135 5 C -0.357 4.357 6 S 0.342 5.658 7 C 0.259 3.741 8 O -0.363 6.363 9 C -0.586 4.586 10 H 0.052 0.948 11 C -0.156 4.156 12 N -0.577 5.577 13 Si 0.699 3.301 14 H -0.179 1.179 15 H -0.241 1.241 16 H -0.109 1.109 17 C -0.105 4.105 18 H 0.085 0.915 19 C -0.171 4.171 20 C -0.086 4.086 21 H 0.088 0.912 22 H 0.105 0.895 23 H 0.117 0.883 24 H 0.181 0.819 25 H 0.219 0.781 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.113 0.887 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.696 8.758 -6.882 14.767 hybrid contribution -0.143 0.343 0.860 0.937 sum -9.839 9.101 -6.022 14.693 Atomic orbital electron populations 1.20406 0.84970 1.03520 1.04340 1.24692 1.01404 0.94601 1.09418 1.19744 0.90770 1.00530 1.05685 1.20901 0.95373 0.94868 1.02396 1.26905 1.01624 0.97067 1.10070 1.84054 0.96738 1.10974 1.74008 1.18258 0.81633 0.93298 0.80903 1.86301 1.72979 1.44863 1.32137 1.21700 1.33216 1.09056 0.94596 0.94767 1.25550 0.96792 0.97275 0.96029 1.70066 1.44192 1.40288 1.03109 0.87132 0.81530 0.84858 0.76616 1.17873 1.24139 1.10855 1.22150 0.96168 0.92821 0.99356 0.91462 1.21366 0.94918 1.00557 1.00272 1.21187 0.88475 0.96402 1.02488 0.91236 0.89455 0.88323 0.81937 0.78129 0.92619 0.91813 0.91003 0.94442 0.88747 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.37 71.24 0.74 -0.84 16 2 C -0.18 -5.77 6.47 24.52 0.16 -5.61 16 3 C -0.14 -4.35 10.02 21.56 0.22 -4.13 16 4 C -0.12 -4.59 4.45 -19.73 -0.09 -4.67 16 5 C -0.24 -10.23 3.70 25.13 0.09 -10.14 16 6 S 0.08 2.97 21.50 -56.49 -1.21 1.75 16 7 C 0.30 14.08 0.91 -11.42 -0.01 14.07 16 8 O -0.56 -24.37 11.55 -148.98 -1.72 -26.09 16 9 C -0.55 -31.48 9.08 25.60 0.23 -31.24 16 10 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 11 C 0.04 2.53 5.26 84.65 0.45 2.97 16 12 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 13 Si 0.87 42.87 22.36 68.60 1.53 44.41 16 14 H -0.25 -12.21 6.08 99.48 0.60 -11.61 16 15 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 16 H -0.19 -8.06 2.92 99.48 0.29 -7.77 16 17 C -0.08 -3.50 2.35 -10.01 -0.02 -3.52 16 18 H 0.07 3.04 5.20 -2.39 -0.01 3.02 16 19 C -0.11 -4.12 8.61 71.98 0.62 -3.50 16 20 C -0.05 -1.59 5.53 30.90 0.17 -1.42 16 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 25 H 0.37 14.70 9.08 -74.06 -0.67 14.03 16 26 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 27 H 0.06 2.19 7.41 -2.39 -0.02 2.17 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.09 2.86 7.83 -2.38 -0.02 2.84 16 31 H 0.09 2.55 7.95 -2.39 -0.02 2.53 16 Total: -1.00 -69.13 254.82 1.40 -67.74 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -0.05 Total: 19.47 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 2.55 Total: -48.04 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.30 Total: -59.24 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -1.72 Total: -26.09 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.53 Total: 44.41 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.21 Total: 1.75 kcal Total: -69.13 1.40 -67.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354676.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.960 kcal (2) G-P(sol) polarization free energy of solvation -69.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds