Wall clock time and date at job start Mon Mar 30 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32633 * 125.17431 * 2 1 4 4 C 1.40123 * 115.63509 * 180.02562 * 3 2 1 5 5 C 1.33823 * 113.70861 * 359.95255 * 4 3 2 6 6 S 1.75584 * 125.18027 * 180.02562 * 2 1 3 7 7 C 1.52113 * 110.67743 * 180.02562 * 5 4 3 8 8 O 1.42890 * 110.45837 * 258.52337 * 7 5 4 9 9 C 1.50703 * 110.36559 * 136.25384 * 7 5 4 10 10 H 1.08003 * 119.99674 * 339.97831 * 9 7 5 11 11 C 1.37874 * 120.00375 * 159.98128 * 9 7 5 12 12 N 1.31517 * 119.99429 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 120.00525 * 180.27468 * 11 9 7 14 14 H 1.48498 * 109.47144 * 269.72614 * 13 11 9 15 15 H 1.48502 * 109.46797 * 29.72131 * 13 11 9 16 16 H 1.48492 * 109.47282 * 149.72418 * 13 11 9 17 17 C 1.54216 * 104.84028 * 17.41393 * 7 5 4 18 18 H 1.09002 * 110.97980 * 215.40793 * 17 7 5 19 19 C 1.53004 * 110.97939 * 91.62699 * 17 7 5 20 20 C 1.52797 * 136.53910 * 179.89522 * 4 3 2 21 21 H 1.08992 * 109.47502 * 89.99648 * 1 2 3 22 22 H 1.09002 * 109.46900 * 210.00016 * 1 2 3 23 23 H 1.09000 * 109.47161 * 329.99199 * 1 2 3 24 24 H 1.07997 * 122.18539 * 0.08074 * 3 2 1 25 25 H 0.96705 * 114.00633 * 297.00591 * 8 7 5 26 26 H 0.97004 * 120.00069 * 180.02562 * 12 11 9 27 27 H 1.08998 * 109.46920 * 66.21460 * 19 17 7 28 28 H 1.08997 * 109.47082 * 186.21262 * 19 17 7 29 29 H 1.08994 * 109.47072 * 306.21801 * 19 17 7 30 30 H 1.09009 * 110.32000 * 43.60898 * 20 4 3 31 31 H 1.08996 * 110.41826 * 281.43707 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2710 1.0841 0.0000 4 6 3.6528 0.8519 -0.0006 5 6 3.9804 -0.4456 0.0000 6 16 2.5186 -1.4351 -0.0006 7 6 5.4918 -0.6180 0.0000 8 8 5.9577 -0.9398 -1.3119 9 6 5.8972 -1.6911 0.9773 10 1 5.2240 -1.9815 1.7704 11 6 7.1275 -2.3020 0.8592 12 7 7.9475 -1.9479 -0.1062 13 14 7.6270 -3.6375 2.0660 14 1 8.3271 -3.0229 3.2225 15 1 6.4156 -4.3516 2.5433 16 1 8.5353 -4.5994 1.3918 17 6 6.0454 0.7507 0.4454 18 1 6.9792 0.9798 -0.0681 19 6 6.2316 0.7985 1.9634 20 6 4.9208 1.7046 -0.0027 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5140 24 1 1.8553 2.0809 0.0013 25 1 5.6220 -1.7799 -1.6536 26 1 8.8130 -2.3780 -0.1896 27 1 7.0134 0.0976 2.2558 28 1 6.5172 1.8069 2.2627 29 1 5.2969 0.5251 2.4528 30 1 4.8223 2.5312 0.7011 31 1 5.1226 2.0834 -1.0046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260354681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:44 Heat of formation + Delta-G solvation = -14.075984 kcal Electronic energy + Delta-G solvation = -15266.300377 eV Core-core repulsion = 12832.407242 eV Total energy + Delta-G solvation = -2433.893135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.00850 -35.77288 -33.30396 -32.12019 -30.56054 -27.42208 -26.89440 -24.60010 -22.90982 -21.01098 -18.89804 -17.66903 -16.79351 -16.43325 -14.63864 -14.62764 -13.84865 -13.71935 -13.31170 -13.15632 -12.98929 -12.37809 -12.02119 -11.62017 -11.43481 -11.15929 -11.01631 -10.88257 -10.80072 -10.45607 -10.21077 -10.02422 -9.96946 -9.79786 -9.11208 -8.54468 -8.26314 -7.78947 -7.48343 -5.95884 -4.14987 1.75989 2.24582 2.83703 3.26248 3.34251 3.36169 3.40121 4.38331 5.07621 5.22229 5.49841 5.62420 5.68974 5.70958 5.85429 5.99688 6.04425 6.17582 6.41807 6.44151 6.60441 6.69422 6.78284 6.89160 7.11175 7.28528 7.40476 7.44548 7.57402 7.83044 8.13575 8.77445 9.33917 9.57947 11.01560 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.030036 B = 0.009628 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.990159 B = 2907.486206 C = 3317.547330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.217 4.217 3 C -0.112 4.112 4 C -0.154 4.154 5 C -0.165 4.165 6 S 0.098 5.902 7 C 0.323 3.677 8 O -0.531 6.531 9 C -0.555 4.555 10 H 0.058 0.942 11 C 0.081 3.919 12 N -0.848 5.848 13 Si 0.880 3.120 14 H -0.279 1.279 15 H -0.273 1.273 16 H -0.286 1.286 17 C -0.061 4.061 18 H 0.081 0.919 19 C -0.109 4.109 20 C -0.052 4.052 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.123 0.877 25 H 0.353 0.647 26 H 0.258 0.742 27 H 0.067 0.933 28 H 0.028 0.972 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 3.982 0.372 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.334 4.334 3 C -0.144 4.144 4 C -0.164 4.164 5 C -0.283 4.283 6 S 0.364 5.636 7 C 0.281 3.719 8 O -0.333 6.333 9 C -0.593 4.593 10 H 0.076 0.924 11 C -0.126 4.126 12 N -0.482 5.482 13 Si 0.708 3.292 14 H -0.205 1.205 15 H -0.198 1.198 16 H -0.212 1.212 17 C -0.081 4.081 18 H 0.100 0.900 19 C -0.166 4.166 20 C -0.091 4.091 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.141 0.859 25 H 0.197 0.803 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.882 2.946 0.343 9.364 hybrid contribution 0.195 0.187 0.650 0.704 sum -8.686 3.133 0.992 9.287 Atomic orbital electron populations 1.20170 0.88582 1.02283 1.01875 1.24016 0.99277 0.96602 1.13479 1.19476 0.92074 0.98429 1.04372 1.20552 0.93639 0.95756 1.06475 1.27463 1.02357 0.95528 1.02929 1.83839 0.96387 1.08673 1.74719 1.18031 0.77991 0.92983 0.82919 1.86457 1.73831 1.41213 1.31810 1.21421 1.02019 1.21406 1.14501 0.92388 1.24985 0.96254 0.96312 0.95010 1.70177 1.08072 1.40358 1.29631 0.86793 0.78654 0.82202 0.81598 1.20490 1.19832 1.21156 1.21562 0.96853 0.93619 0.96070 0.90033 1.21445 1.01849 0.98553 0.94756 1.21148 0.90779 0.96753 1.00450 0.91594 0.91880 0.91358 0.85930 0.80260 0.93200 0.91415 0.95313 0.93771 0.92360 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 10.37 36.00 0.37 -0.51 16 2 C -0.22 -3.68 6.47 -36.21 -0.23 -3.91 16 3 C -0.11 -2.01 10.03 -40.77 -0.41 -2.42 16 4 C -0.15 -3.15 6.54 -104.42 -0.68 -3.84 16 5 C -0.16 -3.67 6.33 -35.16 -0.22 -3.90 16 6 S 0.10 1.89 23.33 -107.50 -2.51 -0.62 16 7 C 0.32 7.92 0.85 -91.59 -0.08 7.85 16 8 O -0.53 -13.70 11.21 -35.23 -0.39 -14.10 16 9 C -0.56 -14.58 6.26 -34.44 -0.22 -14.79 16 10 H 0.06 1.56 7.80 -52.48 -0.41 1.16 16 11 C 0.08 2.15 5.19 -17.82 -0.09 2.05 16 12 N -0.85 -23.49 11.89 55.43 0.66 -22.83 16 13 Si 0.88 20.65 29.54 -169.99 -5.02 15.63 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 17 C -0.06 -1.37 3.30 -89.39 -0.30 -1.67 16 18 H 0.08 1.98 8.11 -51.93 -0.42 1.56 16 19 C -0.11 -2.31 8.16 37.16 0.30 -2.01 16 20 C -0.05 -1.03 6.35 -26.24 -0.17 -1.19 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 25 H 0.35 8.61 9.08 45.56 0.41 9.03 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.07 1.56 7.20 -51.93 -0.37 1.19 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.04 0.94 8.10 -51.93 -0.42 0.52 16 30 H 0.06 1.02 7.92 -51.92 -0.41 0.61 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 272.43 15.07 4.11 4.11 Total: -1.00 -28.46 272.43 -8.17 -36.64 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.29 Total: 5.51 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: -1.72 Total: -24.33 kcal Atomic # 7 Polarization: -23.49 SS G_CDS: 0.66 Total: -22.83 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.39 Total: -14.10 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.51 Total: -0.62 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.46 -8.17 -36.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.561 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds