Wall clock time and date at job start Mon Mar 30 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32633 * 125.17431 * 2 1 4 4 C 1.40123 * 115.63509 * 180.02562 * 3 2 1 5 5 C 1.33823 * 113.70861 * 359.95255 * 4 3 2 6 6 S 1.75584 * 125.18027 * 180.02562 * 2 1 3 7 7 C 1.52113 * 110.67743 * 180.02562 * 5 4 3 8 8 O 1.42890 * 110.45837 * 258.52337 * 7 5 4 9 9 C 1.50703 * 110.36559 * 136.25384 * 7 5 4 10 10 H 1.08003 * 119.99674 * 339.97831 * 9 7 5 11 11 C 1.37874 * 120.00375 * 159.98128 * 9 7 5 12 12 N 1.31517 * 119.99429 * 0.02562 * 11 9 7 13 13 Si 1.86795 * 120.00525 * 180.27468 * 11 9 7 14 14 H 1.48498 * 109.47144 * 269.72614 * 13 11 9 15 15 H 1.48502 * 109.46797 * 29.72131 * 13 11 9 16 16 H 1.48492 * 109.47282 * 149.72418 * 13 11 9 17 17 C 1.54216 * 104.84028 * 17.41393 * 7 5 4 18 18 H 1.09002 * 110.97980 * 215.40793 * 17 7 5 19 19 C 1.53004 * 110.97939 * 91.62699 * 17 7 5 20 20 C 1.52797 * 136.53910 * 179.89522 * 4 3 2 21 21 H 1.08992 * 109.47502 * 89.99648 * 1 2 3 22 22 H 1.09002 * 109.46900 * 210.00016 * 1 2 3 23 23 H 1.09000 * 109.47161 * 329.99199 * 1 2 3 24 24 H 1.07997 * 122.18539 * 0.08074 * 3 2 1 25 25 H 0.96705 * 114.00633 * 297.00591 * 8 7 5 26 26 H 0.97004 * 120.00069 * 180.02562 * 12 11 9 27 27 H 1.08998 * 109.46920 * 66.21460 * 19 17 7 28 28 H 1.08997 * 109.47082 * 186.21262 * 19 17 7 29 29 H 1.08994 * 109.47072 * 306.21801 * 19 17 7 30 30 H 1.09009 * 110.32000 * 43.60898 * 20 4 3 31 31 H 1.08996 * 110.41826 * 281.43707 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2710 1.0841 0.0000 4 6 3.6528 0.8519 -0.0006 5 6 3.9804 -0.4456 0.0000 6 16 2.5186 -1.4351 -0.0006 7 6 5.4918 -0.6180 0.0000 8 8 5.9577 -0.9398 -1.3119 9 6 5.8972 -1.6911 0.9773 10 1 5.2240 -1.9815 1.7704 11 6 7.1275 -2.3020 0.8592 12 7 7.9475 -1.9479 -0.1062 13 14 7.6270 -3.6375 2.0660 14 1 8.3271 -3.0229 3.2225 15 1 6.4156 -4.3516 2.5433 16 1 8.5353 -4.5994 1.3918 17 6 6.0454 0.7507 0.4454 18 1 6.9792 0.9798 -0.0681 19 6 6.2316 0.7985 1.9634 20 6 4.9208 1.7046 -0.0027 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5140 24 1 1.8553 2.0809 0.0013 25 1 5.6220 -1.7799 -1.6536 26 1 8.8130 -2.3780 -0.1896 27 1 7.0134 0.0976 2.2558 28 1 6.5172 1.8069 2.2627 29 1 5.2969 0.5251 2.4528 30 1 4.8223 2.5312 0.7011 31 1 5.1226 2.0834 -1.0046 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260354681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:44 Heat of formation + Delta-G solvation = -31.343473 kcal Electronic energy + Delta-G solvation = -15267.049151 eV Core-core repulsion = 12832.407242 eV Total energy + Delta-G solvation = -2434.641909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.65058 -37.39047 -35.04684 -34.13897 -31.98077 -29.25916 -28.32343 -26.37976 -24.59951 -22.47694 -20.64658 -19.24718 -18.64428 -18.10984 -16.67554 -16.29048 -15.42588 -15.30639 -14.85399 -14.60278 -14.41516 -13.78461 -13.68509 -13.17717 -13.08777 -12.86665 -12.76118 -12.60339 -12.34256 -12.27560 -12.02745 -11.73535 -11.55819 -11.43884 -10.97906 -10.54881 -10.21370 -9.26239 -9.01604 -7.99426 -6.23148 0.28981 0.78897 1.35024 1.37439 1.40607 1.48595 1.90429 2.41609 3.18214 3.66856 3.99976 4.02529 4.32595 4.49995 4.57607 4.70264 4.74178 4.80444 4.81829 4.91824 5.05222 5.14781 5.18481 5.32317 5.53399 5.63190 5.66521 5.72589 5.79198 5.84913 6.17178 6.72760 7.33461 7.56996 8.97169 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.030036 B = 0.009628 C = 0.008438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.990159 B = 2907.486206 C = 3317.547330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.190 4.190 3 C -0.130 4.130 4 C -0.145 4.145 5 C -0.215 4.215 6 S 0.080 5.920 7 C 0.311 3.689 8 O -0.547 6.547 9 C -0.555 4.555 10 H 0.044 0.956 11 C 0.040 3.960 12 N -0.877 5.877 13 Si 0.935 3.065 14 H -0.275 1.275 15 H -0.273 1.273 16 H -0.284 1.284 17 C -0.066 4.066 18 H 0.055 0.945 19 C -0.098 4.098 20 C -0.046 4.046 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.093 0.907 24 H 0.157 0.843 25 H 0.352 0.648 26 H 0.256 0.744 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 5.120 1.022 12.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.307 4.307 3 C -0.160 4.160 4 C -0.156 4.156 5 C -0.332 4.332 6 S 0.345 5.655 7 C 0.269 3.731 8 O -0.350 6.350 9 C -0.594 4.594 10 H 0.062 0.938 11 C -0.164 4.164 12 N -0.513 5.513 13 Si 0.761 3.239 14 H -0.200 1.200 15 H -0.198 1.198 16 H -0.209 1.209 17 C -0.086 4.086 18 H 0.074 0.926 19 C -0.156 4.156 20 C -0.085 4.085 21 H 0.103 0.897 22 H 0.091 0.909 23 H 0.112 0.888 24 H 0.174 0.826 25 H 0.195 0.805 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.105 0.895 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.052 4.086 1.003 11.826 hybrid contribution 0.771 -0.149 0.438 0.899 sum -10.281 3.937 1.442 11.103 Atomic orbital electron populations 1.20377 0.85010 1.04044 1.03624 1.24617 1.01240 0.94654 1.10210 1.19728 0.90712 1.00338 1.05203 1.20889 0.95114 0.94991 1.04624 1.27147 1.01877 0.97132 1.07063 1.83798 0.96119 1.10420 1.75147 1.18140 0.80174 0.93191 0.81638 1.86433 1.74599 1.41119 1.32831 1.21556 1.01625 1.21868 1.14309 0.93811 1.25566 0.96321 0.98131 0.96354 1.70291 1.08305 1.41573 1.31165 0.85937 0.78160 0.79979 0.79860 1.20034 1.19812 1.20927 1.21539 0.96723 0.93790 0.96596 0.92644 1.21324 1.00633 0.99780 0.93817 1.21080 0.89418 0.96702 1.01332 0.89712 0.90886 0.88794 0.82570 0.80460 0.93424 0.94113 0.92002 0.94201 0.89476 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 10.37 71.23 0.74 -0.73 16 2 C -0.19 -5.83 6.47 24.52 0.16 -5.67 16 3 C -0.13 -4.20 10.03 21.56 0.22 -3.99 16 4 C -0.14 -5.69 6.54 -19.73 -0.13 -5.82 16 5 C -0.21 -9.54 6.33 25.14 0.16 -9.38 16 6 S 0.08 3.00 23.33 -56.49 -1.32 1.68 16 7 C 0.31 15.54 0.85 -11.42 -0.01 15.54 16 8 O -0.55 -29.32 11.21 -148.98 -1.67 -30.99 16 9 C -0.56 -29.90 6.26 25.60 0.16 -29.74 16 10 H 0.04 2.42 7.80 -2.91 -0.02 2.40 16 11 C 0.04 2.15 5.19 84.65 0.44 2.59 16 12 N -0.88 -50.04 11.89 21.45 0.25 -49.79 16 13 Si 0.93 43.19 29.54 68.60 2.03 45.21 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 15 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 C -0.07 -3.01 3.30 -10.00 -0.03 -3.04 16 18 H 0.06 2.77 8.11 -2.39 -0.02 2.75 16 19 C -0.10 -4.15 8.16 71.98 0.59 -3.57 16 20 C -0.05 -1.76 6.35 30.91 0.20 -1.56 16 21 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 25 H 0.35 18.05 9.08 -74.05 -0.67 17.38 16 26 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.04 1.90 7.20 -2.39 -0.02 1.88 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 30 H 0.09 2.79 7.92 -2.38 -0.02 2.77 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -62.07 272.43 2.24 -59.83 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.46 Total: 19.42 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 2.48 Total: -45.37 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.25 Total: -49.79 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -1.67 Total: -30.99 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.32 Total: 1.68 kcal Total: -62.07 2.24 -59.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.489 kcal (2) G-P(sol) polarization free energy of solvation -62.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds