Wall clock time and date at job start Mon Mar 30 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 110.66774 * 2 1 4 4 O 1.43779 * 110.74809 * 123.22067 * 2 1 3 5 5 C 1.36160 * 109.19597 * 90.61488 * 4 2 1 6 6 C 1.38879 * 111.22007 * 19.34411 * 5 4 2 7 7 C 1.37736 * 120.79258 * 178.97276 * 6 5 4 8 8 C 1.38385 * 119.99722 * 0.36048 * 7 6 5 9 9 C 1.38250 * 119.77898 * 0.02562 * 8 7 6 10 10 C 1.38068 * 120.33395 * 0.07004 * 9 8 7 11 11 Cl 1.73600 * 119.89145 * 179.72660 * 10 9 8 12 12 C 1.51643 * 107.04530 * 358.56952 * 6 5 4 13 13 H 1.09001 * 110.93661 * 226.69519 * 12 6 5 14 14 C 1.50700 * 110.93773 * 103.01867 * 12 6 5 15 15 H 1.07997 * 119.99977 * 241.45582 * 14 12 6 16 16 C 1.37877 * 119.99875 * 61.45205 * 14 12 6 17 17 N 1.31515 * 119.99865 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00053 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47063 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47360 * 120.00442 * 18 16 14 21 21 H 1.48508 * 109.47194 * 240.00279 * 18 16 14 22 22 H 1.09006 * 109.46428 * 298.23146 * 1 2 3 23 23 H 1.08994 * 109.47041 * 58.22851 * 1 2 3 24 24 H 1.08991 * 109.46924 * 178.23239 * 1 2 3 25 25 H 1.07994 * 120.00367 * 180.38535 * 7 6 5 26 26 H 1.08001 * 120.11266 * 180.02562 * 8 7 6 27 27 H 1.08002 * 119.82973 * 179.78535 * 9 8 7 28 28 H 0.97002 * 119.99565 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 8 2.0394 -0.7366 1.1248 5 6 2.2109 -2.0390 0.7665 6 6 2.2706 -2.1768 -0.6142 7 6 2.4621 -3.4125 -1.1918 8 6 2.5901 -4.5365 -0.3947 9 6 2.5246 -4.4139 0.9808 10 6 2.3308 -3.1767 1.5621 11 17 2.2433 -3.0370 3.2903 12 6 2.0821 -0.7941 -1.2075 13 1 1.3592 -0.8154 -2.0230 14 6 3.3974 -0.2232 -1.6713 15 1 3.7765 0.6869 -1.2306 16 6 4.1168 -0.8630 -2.6583 17 7 3.6549 -1.9711 -3.1953 18 14 5.7476 -0.1559 -3.2328 19 1 6.0421 1.0873 -2.4760 20 1 6.8279 -1.1469 -2.9958 21 1 5.6694 0.1538 -4.6832 22 1 -0.3632 0.4862 0.9055 23 1 -0.3633 0.5411 -0.8736 24 1 -0.3633 -1.0271 -0.0317 25 1 2.5126 -3.5041 -2.2667 26 1 2.7407 -5.5062 -0.8457 27 1 2.6210 -5.2910 1.6035 28 1 4.1609 -2.4210 -3.8899 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400053.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:48 Heat of formation + Delta-G solvation = -34.450333 kcal Electronic energy + Delta-G solvation = -14949.568347 eV Core-core repulsion = 12376.914913 eV Total energy + Delta-G solvation = -2572.653434 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.93751 -38.40630 -37.17962 -35.43070 -33.09647 -31.42747 -30.64305 -28.81946 -25.61569 -23.45669 -22.49290 -22.03123 -18.74249 -17.88184 -17.40467 -16.66708 -16.45040 -16.42095 -15.13816 -14.58664 -14.50639 -14.15369 -13.86801 -13.52651 -13.31630 -12.95080 -12.83591 -12.61807 -12.49209 -12.21249 -11.97984 -11.89277 -11.66590 -11.27463 -11.15655 -10.62127 -9.37928 -8.88544 -8.13997 -6.31004 0.48157 0.58071 1.29598 1.38660 1.42226 1.51618 2.38233 2.48932 2.93505 3.12049 3.94972 4.14665 4.17261 4.29674 4.39604 4.49224 4.61940 4.79177 4.84346 5.01133 5.16943 5.29149 5.34110 5.41451 5.61505 5.78689 5.90802 6.05864 6.11702 6.37906 6.73530 7.35972 8.86337 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.009837 C = 0.008612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.682183 B = 2845.614691 C = 3250.357839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 H 0.108 0.892 4 O -0.312 6.312 5 C 0.080 3.920 6 C -0.119 4.119 7 C -0.066 4.066 8 C -0.150 4.150 9 C -0.097 4.097 10 C -0.079 4.079 11 Cl -0.078 7.078 12 C 0.055 3.945 13 H 0.035 0.965 14 C -0.533 4.533 15 H 0.056 0.944 16 C 0.026 3.974 17 N -0.895 5.895 18 Si 0.953 3.047 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.274 1.274 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.046 0.954 25 H 0.139 0.861 26 H 0.155 0.845 27 H 0.161 0.839 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.845 -3.188 5.309 7.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 H 0.126 0.874 4 O -0.226 6.226 5 C 0.034 3.966 6 C -0.121 4.121 7 C -0.084 4.084 8 C -0.168 4.168 9 C -0.115 4.115 10 C -0.106 4.106 11 Cl -0.049 7.049 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.571 4.571 15 H 0.074 0.926 16 C -0.175 4.175 17 N -0.532 5.532 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.200 1.200 22 H 0.094 0.906 23 H 0.105 0.895 24 H 0.066 0.934 25 H 0.157 0.843 26 H 0.172 0.828 27 H 0.178 0.822 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.784 -3.167 5.532 7.413 hybrid contribution 1.000 0.448 -0.484 1.198 sum -2.784 -2.719 5.048 6.374 Atomic orbital electron populations 1.22127 0.93206 1.02258 1.03556 1.23702 0.94800 0.96221 0.83740 0.87389 1.86758 1.80464 1.16361 1.39049 1.19555 0.98925 0.85092 0.93053 1.21387 1.01180 0.97421 0.92118 1.21177 0.94490 0.90654 1.02098 1.21349 1.03532 0.99303 0.92597 1.20908 1.00427 0.94794 0.95418 1.20233 1.14280 0.92487 0.83592 1.98289 1.97274 1.98474 1.10877 1.19064 0.96342 0.87805 0.93108 0.94740 1.21293 1.05757 1.09589 1.20420 0.92561 1.25605 1.00725 0.95126 0.96018 1.69915 1.39360 1.17519 1.26425 0.85571 0.79822 0.78433 0.78245 1.19675 1.20974 1.19954 0.90585 0.89534 0.93434 0.84305 0.82785 0.82184 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.51 71.98 0.68 -4.44 15 2 C 0.07 2.94 3.84 31.18 0.12 3.06 15 3 H 0.11 4.32 7.77 -2.39 -0.02 4.30 15 4 O -0.31 -14.05 10.81 -95.37 -1.03 -15.08 15 5 C 0.08 3.59 6.74 22.69 0.15 3.74 15 6 C -0.12 -5.69 5.25 -19.53 -0.10 -5.79 15 7 C -0.07 -2.92 8.93 22.19 0.20 -2.72 15 8 C -0.15 -5.36 10.07 22.31 0.22 -5.14 15 9 C -0.10 -3.31 9.79 22.23 0.22 -3.09 15 10 C -0.08 -3.09 6.34 22.50 0.14 -2.94 15 11 Cl -0.08 -2.65 28.94 -2.72 -0.08 -2.73 15 12 C 0.06 2.70 2.61 -11.40 -0.03 2.67 15 13 H 0.03 1.77 7.92 -2.39 -0.02 1.75 15 14 C -0.53 -28.45 8.61 25.60 0.22 -28.23 15 15 H 0.06 3.00 7.59 -2.91 -0.02 2.98 15 16 C 0.03 1.39 5.33 84.65 0.45 1.84 15 17 N -0.89 -47.29 9.87 21.45 0.21 -47.08 15 18 Si 0.95 42.25 29.54 68.60 2.03 44.27 15 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 15 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 22 H 0.08 2.19 8.14 -2.38 -0.02 2.17 15 23 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.05 1.64 8.12 -2.39 -0.02 1.62 15 25 H 0.14 6.58 6.10 -2.91 -0.02 6.57 15 26 H 0.15 4.37 8.06 -2.91 -0.02 4.35 15 27 H 0.16 4.22 8.06 -2.91 -0.02 4.20 15 28 H 0.27 13.30 8.31 -92.71 -0.77 12.53 15 Total: -1.00 -57.36 255.70 4.58 -52.78 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 1.17 Total: 8.88 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 2.28 Total: -41.05 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.21 Total: -47.08 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.03 Total: -15.08 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 17 Polarization: -2.65 SS G_CDS: -0.08 Total: -2.73 kcal Total: -57.36 4.58 -52.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400053.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.334 kcal (2) G-P(sol) polarization free energy of solvation -57.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds