Wall clock time and date at job start Mon Mar 30 2020 05:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.67098 * 2 1 4 4 O 1.43761 * 110.90494 * 236.67439 * 2 1 3 5 5 C 1.36153 * 109.28513 * 214.05307 * 4 2 1 6 6 C 1.38964 * 111.26316 * 18.58944 * 5 4 2 7 7 C 1.37664 * 120.78041 * 179.43573 * 6 5 4 8 8 C 1.38377 * 120.02736 * 0.38114 * 7 6 5 9 9 C 1.38244 * 119.77685 * 359.97438 * 8 7 6 10 10 C 1.38068 * 120.33542 * 359.83119 * 9 8 7 11 11 Cl 1.73596 * 119.88628 * 180.02562 * 10 9 8 12 12 C 1.51641 * 106.98347 * 359.40646 * 6 5 4 13 13 H 1.09006 * 110.94042 * 226.11383 * 12 6 5 14 14 C 1.50698 * 110.94274 * 102.45966 * 12 6 5 15 15 H 1.08004 * 120.00066 * 249.21983 * 14 12 6 16 16 C 1.37878 * 120.00273 * 69.21665 * 14 12 6 17 17 N 1.31518 * 119.99851 * 0.02562 * 16 14 12 18 18 Si 1.86796 * 120.00278 * 180.27728 * 16 14 12 19 19 H 1.48507 * 109.47192 * 269.72843 * 18 16 14 20 20 H 1.48504 * 109.46985 * 29.72263 * 18 16 14 21 21 H 1.48498 * 109.47587 * 149.72484 * 18 16 14 22 22 H 1.09002 * 109.47449 * 289.16785 * 1 2 3 23 23 H 1.09001 * 109.47258 * 49.16227 * 1 2 3 24 24 H 1.08999 * 109.47562 * 169.16285 * 1 2 3 25 25 H 1.08004 * 119.96682 * 180.34856 * 7 6 5 26 26 H 1.08000 * 120.10891 * 179.97438 * 8 7 6 27 27 H 1.08004 * 119.83028 * 179.80170 * 9 8 7 28 28 H 0.97006 * 120.00014 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 8 2.0429 -0.7378 -1.1221 5 6 3.1980 -1.3612 -0.7603 6 6 3.3100 -1.4522 0.6218 7 6 4.4009 -2.0595 1.2018 8 6 5.4065 -2.5814 0.4073 9 6 5.3110 -2.4910 -0.9688 10 6 4.2163 -1.8861 -1.5536 11 17 4.1080 -1.7796 -3.2829 12 6 2.0780 -0.7925 1.2104 13 1 2.3475 -0.1212 2.0258 14 6 1.0830 -1.8254 1.6731 15 1 0.1474 -1.9475 1.1475 16 6 1.3670 -2.6146 2.7675 17 7 2.5060 -2.4656 3.4078 18 14 0.1370 -3.9002 3.3364 19 1 -0.7862 -3.2963 4.3306 20 1 -0.6423 -4.3896 2.1708 21 1 0.8614 -5.0367 3.9600 22 1 -0.3634 0.3374 0.9707 23 1 -0.3634 0.6720 -0.7775 24 1 -0.3634 -1.0093 -0.1932 25 1 4.4717 -2.1280 2.2773 26 1 6.2631 -3.0578 0.8609 27 1 6.0970 -2.8952 -1.5896 28 1 2.7057 -3.0205 4.1780 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400054.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:50 Heat of formation + Delta-G solvation = -31.569339 kcal Electronic energy + Delta-G solvation = -14919.863867 eV Core-core repulsion = 12347.335363 eV Total energy + Delta-G solvation = -2572.528504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.90374 -38.45374 -37.19944 -35.50961 -33.12214 -31.70282 -30.67689 -28.05184 -26.23340 -23.29671 -22.42636 -21.96949 -18.93018 -17.90732 -17.54496 -16.71815 -16.45277 -16.03460 -15.23030 -14.82774 -14.40343 -14.27161 -13.69948 -13.62987 -13.13059 -13.04328 -12.77809 -12.59616 -12.33624 -12.15744 -12.06958 -11.92187 -11.65348 -11.16721 -11.06788 -10.58683 -9.41968 -8.90349 -8.13977 -6.25707 0.43079 0.54459 1.27161 1.40780 1.43525 1.51443 2.39868 2.43672 2.88758 3.15728 3.99881 4.07620 4.21400 4.27383 4.37301 4.50135 4.66242 4.71683 4.98566 5.01849 5.20943 5.31359 5.36561 5.42339 5.59977 5.81955 5.86230 5.98210 6.14719 6.37051 6.79439 7.40712 8.90888 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.026335 B = 0.009905 C = 0.008302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.957308 B = 2826.116280 C = 3372.002459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.072 3.928 3 H 0.080 0.920 4 O -0.312 6.312 5 C 0.078 3.922 6 C -0.125 4.125 7 C -0.073 4.073 8 C -0.144 4.144 9 C -0.096 4.096 10 C -0.075 4.075 11 Cl -0.076 7.076 12 C 0.052 3.948 13 H 0.033 0.967 14 C -0.524 4.524 15 H 0.072 0.928 16 C 0.024 3.976 17 N -0.902 5.902 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.286 1.286 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.130 0.870 26 H 0.157 0.843 27 H 0.163 0.837 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.392 1.465 -5.974 7.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.016 3.984 3 H 0.098 0.902 4 O -0.226 6.226 5 C 0.032 3.968 6 C -0.127 4.127 7 C -0.092 4.092 8 C -0.162 4.162 9 C -0.115 4.115 10 C -0.102 4.102 11 Cl -0.047 7.047 12 C 0.033 3.967 13 H 0.051 0.949 14 C -0.561 4.561 15 H 0.090 0.910 16 C -0.176 4.176 17 N -0.539 5.539 18 Si 0.776 3.224 19 H -0.197 1.197 20 H -0.200 1.200 21 H -0.211 1.211 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.148 0.852 26 H 0.174 0.826 27 H 0.181 0.819 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.338 1.423 -6.183 7.169 hybrid contribution -0.601 -0.700 0.601 1.101 sum 2.737 0.724 -5.582 6.259 Atomic orbital electron populations 1.21690 0.91246 1.02218 1.02688 1.23606 0.96946 0.94034 0.83766 0.90185 1.86718 1.34432 1.62642 1.38856 1.19577 0.87569 0.96666 0.92982 1.21559 0.96885 1.01881 0.92342 1.20954 0.91965 0.94698 1.01535 1.21324 1.00130 1.02125 0.92623 1.20918 0.96184 0.99038 0.95327 1.20242 0.96386 1.09876 0.83660 1.98294 1.98344 1.97482 1.10592 1.19087 0.90199 0.94275 0.93093 0.94944 1.21410 1.02872 1.19268 1.12586 0.91000 1.25639 0.96893 0.98695 0.96418 1.69968 1.23508 1.40299 1.20159 0.85669 0.79322 0.78996 0.78372 1.19687 1.20005 1.21129 0.89978 0.91176 0.92712 0.85177 0.82575 0.81942 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.44 71.98 0.61 -3.78 15 2 C 0.07 2.98 4.16 31.18 0.13 3.11 15 3 H 0.08 3.00 8.14 -2.39 -0.02 2.98 15 4 O -0.31 -13.92 10.80 -95.29 -1.03 -14.95 15 5 C 0.08 3.49 6.83 22.71 0.16 3.65 15 6 C -0.13 -5.94 5.37 -19.53 -0.10 -6.04 15 7 C -0.07 -3.22 9.33 22.17 0.21 -3.02 15 8 C -0.14 -5.06 10.07 22.30 0.22 -4.83 15 9 C -0.10 -3.21 9.79 22.23 0.22 -2.99 15 10 C -0.07 -2.87 6.34 22.50 0.14 -2.73 15 11 Cl -0.08 -2.55 28.94 -2.72 -0.08 -2.62 15 12 C 0.05 2.53 2.83 -11.40 -0.03 2.50 15 13 H 0.03 1.69 8.14 -2.38 -0.02 1.67 15 14 C -0.52 -27.22 7.88 25.60 0.20 -27.02 15 15 H 0.07 3.67 5.36 -2.91 -0.02 3.65 15 16 C 0.02 1.27 5.38 84.65 0.46 1.73 15 17 N -0.90 -48.09 10.80 21.45 0.23 -47.85 15 18 Si 0.95 41.96 29.54 68.60 2.03 43.98 15 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 15 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 21 H -0.29 -12.53 7.11 99.48 0.71 -11.82 15 22 H 0.08 2.85 8.04 -2.39 -0.02 2.83 15 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.05 2.15 6.52 -2.39 -0.02 2.13 15 25 H 0.13 6.16 6.47 -2.91 -0.02 6.14 15 26 H 0.16 4.30 8.06 -2.91 -0.02 4.28 15 27 H 0.16 4.14 8.06 -2.91 -0.02 4.12 15 28 H 0.26 13.42 8.31 -92.70 -0.77 12.65 15 Total: -1.00 -57.00 253.04 4.53 -52.47 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.18 Total: 8.41 kcal Atomic # 6 Polarization: -41.63 SS G_CDS: 2.20 Total: -39.42 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: 0.23 Total: -47.85 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.03 Total: -14.95 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 17 Polarization: -2.55 SS G_CDS: -0.08 Total: -2.62 kcal Total: -57.00 4.53 -52.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400054.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.896 kcal (2) G-P(sol) polarization free energy of solvation -56.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds