Wall clock time and date at job start Mon Mar 30 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 110.66503 * 2 1 4 4 O 1.43769 * 110.74858 * 123.21141 * 2 1 3 5 5 C 1.36160 * 109.22583 * 146.26636 * 4 2 1 6 6 C 1.38878 * 111.23775 * 340.94379 * 5 4 2 7 7 C 1.37725 * 120.79408 * 180.66786 * 6 5 4 8 8 C 1.38378 * 120.00522 * 359.60796 * 7 6 5 9 9 C 1.38253 * 119.77210 * 359.97438 * 8 7 6 10 10 C 1.38064 * 120.33639 * 0.19857 * 9 8 7 11 11 Cl 1.73602 * 119.89163 * 180.02562 * 10 9 8 12 12 C 1.52141 * 107.07105 * 1.09417 * 6 5 4 13 13 H 1.08997 * 111.09604 * 133.48254 * 12 6 5 14 14 C 1.50703 * 110.99141 * 257.31549 * 12 6 5 15 15 H 1.07998 * 120.00634 * 48.97382 * 14 12 6 16 16 C 1.37887 * 119.99814 * 228.96899 * 14 12 6 17 17 N 1.31505 * 119.99882 * 173.93445 * 16 14 12 18 18 Si 1.86801 * 119.99796 * 353.94004 * 16 14 12 19 19 H 1.48493 * 109.47081 * 84.82704 * 18 16 14 20 20 H 1.48503 * 109.46707 * 204.82516 * 18 16 14 21 21 H 1.48499 * 109.47273 * 324.82525 * 18 16 14 22 22 H 1.09006 * 109.47059 * 303.02906 * 1 2 3 23 23 H 1.08999 * 109.46861 * 63.02907 * 1 2 3 24 24 H 1.08994 * 109.46820 * 183.03064 * 1 2 3 25 25 H 1.08006 * 120.00121 * 179.58658 * 7 6 5 26 26 H 1.07995 * 120.12001 * 179.97438 * 8 7 6 27 27 H 1.07996 * 119.83074 * 180.18298 * 9 8 7 28 28 H 0.96998 * 119.99990 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 8 2.0394 -0.7364 1.1248 5 6 3.1981 -1.3559 0.7677 6 6 3.3108 -1.4549 -0.6130 7 6 4.4043 -2.0620 -1.1895 8 6 5.4115 -2.5754 -0.3915 9 6 5.3156 -2.4757 0.9841 10 6 4.2187 -1.8707 1.5646 11 17 4.1104 -1.7512 3.2931 12 6 2.0782 -0.7925 -1.2103 13 1 2.3495 -0.1212 -2.0250 14 6 1.0823 -1.8241 -1.6741 15 1 0.7980 -2.6337 -1.0182 16 6 0.5338 -1.7343 -2.9360 17 7 -0.2420 -2.6962 -3.3857 18 14 0.8929 -0.2464 -4.0068 19 1 2.1736 -0.4539 -4.7292 20 1 -0.2061 -0.0668 -4.9892 21 1 0.9966 0.9643 -3.1532 22 1 -0.3633 0.5602 0.8616 23 1 -0.3633 0.4661 -0.9159 24 1 -0.3633 -1.0262 0.0543 25 1 4.4756 -2.1379 -2.2645 26 1 6.2696 -3.0522 -0.8415 27 1 6.1025 -2.8733 1.6078 28 1 -0.6276 -2.6333 -4.2735 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400056.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:52 Heat of formation + Delta-G solvation = -35.375451 kcal Electronic energy + Delta-G solvation = -14809.366762 eV Core-core repulsion = 12236.673212 eV Total energy + Delta-G solvation = -2572.693550 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.02071 -38.56757 -37.27272 -35.53733 -33.42744 -31.86953 -30.81924 -28.45984 -26.08778 -23.44150 -22.54846 -21.76965 -19.43774 -18.18771 -17.54121 -17.03416 -16.19331 -16.11141 -15.42053 -14.91462 -14.78136 -14.36128 -13.94703 -13.65267 -13.37434 -13.02156 -12.77919 -12.64685 -12.39606 -12.24425 -12.02634 -11.86708 -11.61584 -11.54535 -11.30184 -10.75134 -9.59983 -8.99517 -8.32964 -6.37647 0.25860 0.41034 1.20629 1.35036 1.37125 1.46712 2.30858 2.35729 2.70385 2.99549 3.80245 3.93907 4.08720 4.19275 4.27124 4.42445 4.49031 4.57869 4.76324 4.94112 4.99535 5.13095 5.23782 5.38220 5.43076 5.57428 5.62662 5.75104 6.16700 6.30132 6.64486 7.24724 8.83320 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.032497 B = 0.008979 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.401794 B = 3117.718480 C = 3582.211944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.067 3.933 3 H 0.089 0.911 4 O -0.312 6.312 5 C 0.085 3.915 6 C -0.152 4.152 7 C -0.084 4.084 8 C -0.128 4.128 9 C -0.089 4.089 10 C -0.072 4.072 11 Cl -0.073 7.073 12 C 0.022 3.978 13 H 0.070 0.930 14 C -0.491 4.491 15 H 0.024 0.976 16 C 0.027 3.973 17 N -0.939 5.939 18 Si 0.934 3.066 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.240 1.240 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.132 0.868 26 H 0.171 0.829 27 H 0.168 0.832 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 5.014 5.553 13.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.011 3.989 3 H 0.107 0.893 4 O -0.226 6.226 5 C 0.039 3.961 6 C -0.153 4.153 7 C -0.102 4.102 8 C -0.146 4.146 9 C -0.107 4.107 10 C -0.099 4.099 11 Cl -0.045 7.045 12 C 0.003 3.997 13 H 0.087 0.913 14 C -0.528 4.528 15 H 0.043 0.957 16 C -0.172 4.172 17 N -0.577 5.577 18 Si 0.757 3.243 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.164 1.164 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.066 0.934 25 H 0.150 0.850 26 H 0.189 0.811 27 H 0.186 0.814 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.492 4.972 5.769 12.965 hybrid contribution -0.556 0.170 -0.603 0.837 sum 9.936 5.142 5.166 12.323 Atomic orbital electron populations 1.21559 0.91940 1.02275 1.01646 1.23812 0.96594 0.94290 0.84207 0.89335 1.86770 1.34106 1.62802 1.38971 1.19536 0.87488 0.96152 0.92947 1.21608 0.97319 1.03128 0.93274 1.20723 0.92304 0.96001 1.01177 1.21339 0.99994 1.01003 0.92258 1.21061 0.95846 0.97999 0.95813 1.20369 0.96185 1.09367 0.83974 1.98315 1.98330 1.97316 1.10503 1.19626 0.90249 0.94550 0.95237 0.91255 1.20511 1.22920 1.09766 0.99584 0.95748 1.25869 0.94208 0.98693 0.98460 1.70031 1.34205 1.34344 1.19117 0.85925 0.78583 0.80811 0.78954 1.18683 1.21175 1.16385 0.91389 0.90915 0.93440 0.85012 0.81136 0.81434 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.66 8.78 71.98 0.63 -4.02 15 2 C 0.07 2.73 4.15 31.18 0.13 2.86 15 3 H 0.09 3.13 8.14 -2.39 -0.02 3.11 15 4 O -0.31 -13.61 10.80 -95.37 -1.03 -14.64 15 5 C 0.09 3.52 6.83 22.69 0.15 3.67 15 6 C -0.15 -6.39 5.63 -19.37 -0.11 -6.50 15 7 C -0.08 -2.95 10.03 22.18 0.22 -2.73 15 8 C -0.13 -3.51 10.07 22.31 0.22 -3.28 15 9 C -0.09 -2.48 9.79 22.23 0.22 -2.26 15 10 C -0.07 -2.50 6.34 22.50 0.14 -2.35 15 11 Cl -0.07 -2.30 28.94 -2.72 -0.08 -2.38 15 12 C 0.02 1.01 2.87 -11.24 -0.03 0.98 15 13 H 0.07 2.96 5.07 -2.39 -0.01 2.95 15 14 C -0.49 -26.67 6.88 25.60 0.18 -26.50 15 15 H 0.02 1.55 7.99 -2.91 -0.02 1.53 15 16 C 0.03 1.45 5.47 84.66 0.46 1.91 15 17 N -0.94 -55.76 13.96 21.45 0.30 -55.46 15 18 Si 0.93 40.30 26.91 68.60 1.85 42.15 15 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 15 20 H -0.29 -12.31 7.11 99.48 0.71 -11.60 15 21 H -0.24 -9.35 6.89 99.48 0.69 -8.66 15 22 H 0.07 2.26 8.14 -2.38 -0.02 2.24 15 23 H 0.07 2.79 8.14 -2.39 -0.02 2.77 15 24 H 0.05 2.19 7.00 -2.39 -0.02 2.17 15 25 H 0.13 4.35 8.06 -2.91 -0.02 4.33 15 26 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 27 H 0.17 3.40 8.06 -2.91 -0.02 3.38 15 28 H 0.27 14.93 8.31 -92.71 -0.77 14.16 15 Total: -1.00 -63.50 255.50 4.41 -59.09 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 1.15 Total: 9.46 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 2.22 Total: -38.22 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.30 Total: -55.46 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.03 Total: -14.64 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.85 Total: 42.15 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.08 Total: -2.38 kcal Total: -63.50 4.41 -59.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400056.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.715 kcal (2) G-P(sol) polarization free energy of solvation -63.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds