Wall clock time and date at job start Mon Mar 30 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 110.80649 * 2 1 4 4 O 1.43774 * 110.74522 * 236.68746 * 2 1 3 5 5 C 1.36165 * 109.23001 * 269.42310 * 4 2 1 6 6 C 1.38871 * 111.23201 * 340.96767 * 5 4 2 7 7 C 1.37732 * 120.79579 * 180.64428 * 6 5 4 8 8 C 1.38381 * 119.99795 * 359.61469 * 7 6 5 9 9 C 1.38244 * 119.77695 * 359.97438 * 8 7 6 10 10 C 1.38062 * 120.33498 * 0.19788 * 9 8 7 11 11 Cl 1.73603 * 119.89083 * 180.02562 * 10 9 8 12 12 C 1.51646 * 107.04672 * 1.09010 * 6 5 4 13 13 H 1.08991 * 110.94102 * 133.53422 * 12 6 5 14 14 C 1.50704 * 110.93848 * 257.21924 * 12 6 5 15 15 H 1.07999 * 120.00277 * 118.54386 * 14 12 6 16 16 C 1.37882 * 119.99820 * 298.54027 * 14 12 6 17 17 N 1.31510 * 119.99899 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00015 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46949 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47172 * 120.00176 * 18 16 14 21 21 H 1.48501 * 109.47104 * 240.00278 * 18 16 14 22 22 H 1.08997 * 109.47383 * 181.86355 * 1 2 3 23 23 H 1.09000 * 109.46997 * 301.85828 * 1 2 3 24 24 H 1.09000 * 109.47696 * 61.85823 * 1 2 3 25 25 H 1.08000 * 120.00151 * 179.63703 * 7 6 5 26 26 H 1.08004 * 120.10841 * 180.02562 * 8 7 6 27 27 H 1.07995 * 119.83148 * 180.19178 * 9 8 7 28 28 H 0.97002 * 120.00049 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 8 2.0393 -0.7384 -1.1236 5 6 2.2102 -2.0406 -0.7642 6 6 2.2627 -2.1785 0.6167 7 6 2.4445 -3.4150 1.1955 8 6 2.5695 -4.5399 0.3993 9 6 2.5106 -4.4174 -0.9764 10 6 2.3320 -3.1786 -1.5591 11 17 2.2591 -3.0381 -3.2879 12 6 2.0781 -0.7947 1.2089 13 1 1.3542 -0.8130 2.0235 14 6 3.3948 -0.2278 1.6737 15 1 3.7773 0.6809 1.2328 16 6 4.1111 -0.8692 2.6620 17 7 3.6455 -1.9759 3.1986 18 14 5.7429 -0.1661 3.2386 19 1 6.0417 1.0761 2.4818 20 1 5.6634 0.1440 4.6886 21 1 6.8209 -1.1600 3.0033 22 1 -0.3634 -1.0271 0.0334 23 1 -0.3633 0.5424 0.8729 24 1 -0.3634 0.4847 -0.9061 25 1 2.4891 -3.5066 2.2706 26 1 2.7117 -5.5105 0.8513 27 1 2.6049 -5.2951 -1.5985 28 1 4.1496 -2.4273 3.8936 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260400058.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:55 Heat of formation + Delta-G solvation = -34.490207 kcal Electronic energy + Delta-G solvation = -14950.247436 eV Core-core repulsion = 12377.592274 eV Total energy + Delta-G solvation = -2572.655163 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.050 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.93868 -38.40694 -37.17924 -35.42984 -33.09991 -31.42548 -30.64363 -28.81761 -25.61322 -23.45782 -22.49326 -22.03311 -18.74211 -17.88133 -17.40504 -16.66847 -16.44788 -16.42128 -15.13852 -14.58483 -14.50897 -14.15279 -13.86791 -13.52455 -13.31544 -12.95046 -12.83655 -12.61894 -12.49134 -12.21345 -11.97969 -11.89319 -11.66888 -11.27514 -11.15555 -10.62175 -9.38010 -8.88404 -8.13982 -6.30994 0.48177 0.58155 1.29617 1.38648 1.42192 1.51571 2.38238 2.48701 2.93642 3.12134 3.95071 4.14761 4.17292 4.29561 4.39590 4.49203 4.61909 4.79152 4.84373 5.01102 5.16981 5.29190 5.34153 5.41448 5.61545 5.78576 5.90755 6.05722 6.11657 6.37962 6.73523 7.35968 8.86361 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.025635 B = 0.009842 C = 0.008626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.004097 B = 2844.400663 C = 3245.181936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 H 0.109 0.891 4 O -0.312 6.312 5 C 0.080 3.920 6 C -0.120 4.120 7 C -0.065 4.065 8 C -0.150 4.150 9 C -0.097 4.097 10 C -0.079 4.079 11 Cl -0.078 7.078 12 C 0.055 3.945 13 H 0.035 0.965 14 C -0.534 4.534 15 H 0.056 0.944 16 C 0.027 3.973 17 N -0.895 5.895 18 Si 0.953 3.047 19 H -0.272 1.272 20 H -0.274 1.274 21 H -0.284 1.284 22 H 0.047 0.953 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.139 0.861 26 H 0.155 0.845 27 H 0.161 0.839 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.859 -3.181 -5.312 7.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 H 0.126 0.874 4 O -0.226 6.226 5 C 0.034 3.966 6 C -0.121 4.121 7 C -0.084 4.084 8 C -0.168 4.168 9 C -0.115 4.115 10 C -0.106 4.106 11 Cl -0.049 7.049 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.571 4.571 15 H 0.074 0.926 16 C -0.175 4.175 17 N -0.532 5.532 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.200 1.200 21 H -0.210 1.210 22 H 0.066 0.934 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.156 0.844 26 H 0.172 0.828 27 H 0.178 0.822 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.798 -3.160 -5.535 7.419 hybrid contribution 1.006 0.445 0.487 1.203 sum -2.792 -2.715 -5.048 6.375 Atomic orbital electron populations 1.22126 0.93207 1.02259 1.03552 1.23702 0.94803 0.96187 0.83760 0.87360 1.86753 1.80463 1.16375 1.39050 1.19553 0.98916 0.85091 0.93040 1.21382 1.01202 0.97437 0.92090 1.21161 0.94518 0.90656 1.02051 1.21345 1.03544 0.99294 0.92601 1.20902 1.00468 0.94764 0.95405 1.20229 1.14342 0.92456 0.83572 1.98290 1.97344 1.98470 1.10816 1.19070 0.96361 0.87787 0.93113 0.94732 1.21296 1.05711 1.09728 1.20343 0.92562 1.25605 1.00724 0.95118 0.96023 1.69915 1.39357 1.17519 1.26418 0.85572 0.79833 0.78429 0.78249 1.19672 1.19954 1.20980 0.93432 0.89535 0.90593 0.84350 0.82781 0.82185 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.49 71.98 0.68 -4.44 15 2 C 0.07 2.94 3.85 31.18 0.12 3.06 15 3 H 0.11 4.33 7.77 -2.39 -0.02 4.31 15 4 O -0.31 -14.05 10.81 -95.43 -1.03 -15.08 15 5 C 0.08 3.60 6.74 22.69 0.15 3.75 15 6 C -0.12 -5.69 5.24 -19.53 -0.10 -5.79 15 7 C -0.07 -2.90 8.93 22.18 0.20 -2.70 15 8 C -0.15 -5.36 10.07 22.31 0.22 -5.13 15 9 C -0.10 -3.31 9.79 22.23 0.22 -3.09 15 10 C -0.08 -3.09 6.34 22.49 0.14 -2.95 15 11 Cl -0.08 -2.66 28.94 -2.72 -0.08 -2.73 15 12 C 0.06 2.69 2.60 -11.40 -0.03 2.66 15 13 H 0.03 1.77 7.92 -2.39 -0.02 1.75 15 14 C -0.53 -28.46 8.61 25.60 0.22 -28.24 15 15 H 0.06 3.00 7.60 -2.91 -0.02 2.98 15 16 C 0.03 1.39 5.33 84.66 0.45 1.84 15 17 N -0.89 -47.30 9.89 21.45 0.21 -47.09 15 18 Si 0.95 42.26 29.54 68.60 2.03 44.28 15 19 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 22 H 0.05 1.64 8.12 -2.39 -0.02 1.62 15 23 H 0.09 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.14 6.56 6.12 -2.91 -0.02 6.54 15 26 H 0.15 4.37 8.06 -2.91 -0.02 4.34 15 27 H 0.16 4.22 8.06 -2.91 -0.02 4.20 15 28 H 0.27 13.30 8.31 -92.71 -0.77 12.53 15 Total: -1.00 -57.38 255.72 4.57 -52.80 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.17 Total: 8.85 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 2.28 Total: -41.03 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.21 Total: -47.09 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.03 Total: -15.08 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.08 Total: -2.73 kcal Total: -57.38 4.57 -52.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260400058.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.311 kcal (2) G-P(sol) polarization free energy of solvation -57.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds