Wall clock time and date at job start Mon Mar 30 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32911 * 125.20608 * 2 1 4 4 C 1.39218 * 115.70284 * 179.97438 * 3 2 1 5 5 C 1.34627 * 113.66502 * 359.97033 * 4 3 2 6 6 S 1.75729 * 125.20889 * 179.97438 * 2 1 3 7 7 C 1.51405 * 124.78647 * 180.02562 * 5 4 3 8 8 O 1.42903 * 109.59770 * 256.51096 * 7 5 4 9 9 C 1.50706 * 109.59895 * 136.20655 * 7 5 4 10 10 H 1.08005 * 119.99373 * 240.30907 * 9 7 5 11 11 C 1.37876 * 120.00222 * 60.31157 * 9 7 5 12 12 N 1.31516 * 119.99866 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 119.99992 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47060 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47219 * 119.99631 * 13 11 9 16 16 H 1.48504 * 109.47128 * 239.99925 * 13 11 9 17 17 C 1.53161 * 108.70656 * 16.28007 * 7 5 4 18 18 C 1.53214 * 108.94031 * 310.32782 * 17 7 5 19 19 C 1.52274 * 123.50706 * 179.97438 * 4 3 2 20 20 H 1.09004 * 109.46679 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47296 * 299.99512 * 1 2 3 22 22 H 1.08999 * 109.47221 * 60.00328 * 1 2 3 23 23 H 1.07999 * 122.15142 * 359.96441 * 3 2 1 24 24 H 0.96700 * 114.00311 * 300.00352 * 8 7 5 25 25 H 0.96998 * 119.99623 * 179.97438 * 12 11 9 26 26 H 1.09000 * 109.55719 * 70.20103 * 17 7 5 27 27 H 1.09007 * 109.55397 * 190.51073 * 17 7 5 28 28 H 1.08993 * 109.52866 * 310.64398 * 18 17 7 29 29 H 1.09004 * 109.51884 * 190.54156 * 18 17 7 30 30 H 1.09004 * 109.58710 * 317.28327 * 19 4 3 31 31 H 1.09003 * 109.58454 * 77.55159 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2732 1.0860 0.0000 4 6 3.6463 0.8561 0.0006 5 6 3.9756 -0.4492 0.0017 6 16 2.5201 -1.4358 0.0006 7 6 5.3927 -0.9825 0.0030 8 8 5.7316 -1.4461 -1.3055 9 6 5.5041 -2.1191 0.9864 10 1 6.1898 -2.0484 1.8179 11 6 4.7308 -3.2491 0.8246 12 7 3.8955 -3.3348 -0.1876 13 14 4.8684 -4.6574 2.0439 14 1 5.8717 -4.3154 3.0841 15 1 3.5489 -4.8879 2.6851 16 1 5.2946 -5.8889 1.3317 17 6 6.3426 0.1480 0.4096 18 6 6.0312 1.3874 -0.4355 19 6 4.6850 1.9696 0.0001 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8574 2.0827 -0.0006 24 1 5.1612 -2.1557 -1.6315 25 1 3.3518 -4.1300 -0.3016 26 1 6.2021 0.3807 1.4652 27 1 7.3734 -0.1617 0.2368 28 1 5.9842 1.1083 -1.4881 29 1 6.8135 2.1326 -0.2913 30 1 4.3827 2.7510 -0.6972 31 1 4.7720 2.3885 1.0026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260407027.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:33 Heat of formation + Delta-G solvation = -40.992082 kcal Electronic energy + Delta-G solvation = -15488.505453 eV Core-core repulsion = 13053.445149 eV Total energy + Delta-G solvation = -2435.060304 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.28767 -35.73969 -33.37036 -32.53799 -30.09137 -28.95363 -25.61005 -25.18693 -22.24820 -20.67612 -19.22379 -17.43538 -16.95119 -15.92541 -15.02039 -14.21433 -13.81108 -13.55325 -13.15527 -12.95162 -12.65640 -12.51733 -12.04798 -11.76915 -11.63511 -11.20281 -10.86357 -10.78840 -10.70192 -10.51613 -10.27299 -10.13096 -9.97808 -9.76571 -9.19686 -8.46531 -8.14469 -7.01662 -6.86319 -6.33403 -4.64230 2.47268 3.03400 3.15884 3.19562 3.39822 3.83237 3.93082 4.09184 4.83993 5.66214 5.75948 5.80813 5.99151 6.04894 6.08652 6.17529 6.33212 6.38305 6.41257 6.52443 6.58620 6.69672 6.76071 6.99261 7.07581 7.27719 7.43344 7.55488 7.65992 7.82045 8.00065 8.39859 8.98752 9.31898 10.40773 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.014003 C = 0.009576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.492469 B = 1999.079664 C = 2923.341965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.327 4.327 3 C -0.154 4.154 4 C -0.148 4.148 5 C -0.167 4.167 6 S 0.282 5.718 7 C 0.300 3.700 8 O -0.578 6.578 9 C -0.488 4.488 10 H 0.074 0.926 11 C 0.047 3.953 12 N -0.881 5.881 13 Si 0.917 3.083 14 H -0.269 1.269 15 H -0.276 1.276 16 H -0.277 1.277 17 C -0.091 4.091 18 C -0.116 4.116 19 C -0.046 4.046 20 H 0.051 0.949 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.092 0.908 24 H 0.380 0.620 25 H 0.287 0.713 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 3.393 0.608 3.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.444 4.444 3 C -0.185 4.185 4 C -0.160 4.160 5 C -0.286 4.286 6 S 0.547 5.453 7 C 0.259 3.741 8 O -0.386 6.386 9 C -0.526 4.526 10 H 0.092 0.908 11 C -0.147 4.147 12 N -0.529 5.529 13 Si 0.743 3.257 14 H -0.193 1.193 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.130 4.130 18 C -0.154 4.154 19 C -0.086 4.086 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.110 0.890 24 H 0.230 0.770 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.825 2.110 0.626 2.860 hybrid contribution -0.341 0.635 0.577 0.923 sum -2.167 2.745 1.204 3.698 Atomic orbital electron populations 1.20000 0.91102 1.00712 1.00264 1.26934 1.00633 1.07992 1.08833 1.19366 0.92620 0.97324 1.09148 1.19275 0.93359 0.93761 1.09593 1.26057 1.00944 0.95614 1.05996 1.86560 0.91908 0.98639 1.68234 1.17355 0.84320 0.90279 0.82156 1.86199 1.60586 1.58001 1.33858 1.22291 1.20024 1.00186 1.10086 0.90795 1.25172 0.94277 0.99432 0.95795 1.67659 1.25379 1.28585 1.31301 0.86069 0.78585 0.80652 0.80395 1.19329 1.20151 1.20282 1.21465 0.99001 0.93883 0.98609 1.21535 0.95743 0.97059 1.01030 1.20344 0.93289 0.95123 0.99812 0.92951 0.93112 0.93052 0.88962 0.76998 0.90120 0.91824 0.92193 0.91518 0.93226 0.92634 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 10.37 36.00 0.37 -0.72 16 2 C -0.33 -7.06 6.49 -36.15 -0.23 -7.29 16 3 C -0.15 -3.38 9.86 -41.06 -0.41 -3.78 16 4 C -0.15 -3.35 5.78 -104.76 -0.60 -3.96 16 5 C -0.17 -4.07 5.40 -35.24 -0.19 -4.26 16 6 S 0.28 6.59 18.12 -107.50 -1.95 4.64 16 7 C 0.30 7.38 0.77 -92.49 -0.07 7.31 16 8 O -0.58 -14.78 12.54 -35.23 -0.44 -15.22 16 9 C -0.49 -12.42 8.22 -34.44 -0.28 -12.70 16 10 H 0.07 1.86 7.75 -52.48 -0.41 1.45 16 11 C 0.05 1.14 4.71 -17.82 -0.08 1.06 16 12 N -0.88 -21.39 7.12 55.43 0.39 -20.99 16 13 Si 0.92 19.47 29.54 -169.99 -5.02 14.45 16 14 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 C -0.09 -1.95 4.89 -26.54 -0.13 -2.08 16 18 C -0.12 -2.24 5.87 -26.62 -0.16 -2.39 16 19 C -0.05 -0.89 6.15 -27.10 -0.17 -1.06 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 24 H 0.38 9.80 7.16 45.56 0.33 10.12 16 25 H 0.29 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.06 1.33 8.08 -51.93 -0.42 0.91 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.38 7.74 -51.93 -0.40 0.98 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 261.25 15.07 3.94 3.94 Total: -1.00 -26.12 261.25 -8.45 -34.57 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -3.42 Total: 8.51 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -1.95 Total: -29.89 kcal Atomic # 7 Polarization: -21.39 SS G_CDS: 0.39 Total: -20.99 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.44 Total: -15.22 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -1.95 Total: 4.64 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -26.12 -8.45 -34.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407027.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.422 kcal (2) G-P(sol) polarization free energy of solvation -26.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds