Wall clock time and date at job start Mon Mar 30 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32911 * 125.20608 * 2 1 4 4 C 1.39218 * 115.70284 * 179.97438 * 3 2 1 5 5 C 1.34627 * 113.66502 * 359.97033 * 4 3 2 6 6 S 1.75729 * 125.20889 * 179.97438 * 2 1 3 7 7 C 1.51405 * 124.78647 * 180.02562 * 5 4 3 8 8 O 1.42903 * 109.59770 * 256.51096 * 7 5 4 9 9 C 1.50706 * 109.59895 * 136.20655 * 7 5 4 10 10 H 1.08005 * 119.99373 * 240.30907 * 9 7 5 11 11 C 1.37876 * 120.00222 * 60.31157 * 9 7 5 12 12 N 1.31516 * 119.99866 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 119.99992 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47060 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47219 * 119.99631 * 13 11 9 16 16 H 1.48504 * 109.47128 * 239.99925 * 13 11 9 17 17 C 1.53161 * 108.70656 * 16.28007 * 7 5 4 18 18 C 1.53214 * 108.94031 * 310.32782 * 17 7 5 19 19 C 1.52274 * 123.50706 * 179.97438 * 4 3 2 20 20 H 1.09004 * 109.46679 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47296 * 299.99512 * 1 2 3 22 22 H 1.08999 * 109.47221 * 60.00328 * 1 2 3 23 23 H 1.07999 * 122.15142 * 359.96441 * 3 2 1 24 24 H 0.96700 * 114.00311 * 300.00352 * 8 7 5 25 25 H 0.96998 * 119.99623 * 179.97438 * 12 11 9 26 26 H 1.09000 * 109.55719 * 70.20103 * 17 7 5 27 27 H 1.09007 * 109.55397 * 190.51073 * 17 7 5 28 28 H 1.08993 * 109.52866 * 310.64398 * 18 17 7 29 29 H 1.09004 * 109.51884 * 190.54156 * 18 17 7 30 30 H 1.09004 * 109.58710 * 317.28327 * 19 4 3 31 31 H 1.09003 * 109.58454 * 77.55159 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2732 1.0860 0.0000 4 6 3.6463 0.8561 0.0006 5 6 3.9756 -0.4492 0.0017 6 16 2.5201 -1.4358 0.0006 7 6 5.3927 -0.9825 0.0030 8 8 5.7316 -1.4461 -1.3055 9 6 5.5041 -2.1191 0.9864 10 1 6.1898 -2.0484 1.8179 11 6 4.7308 -3.2491 0.8246 12 7 3.8955 -3.3348 -0.1876 13 14 4.8684 -4.6574 2.0439 14 1 5.8717 -4.3154 3.0841 15 1 3.5489 -4.8879 2.6851 16 1 5.2946 -5.8889 1.3317 17 6 6.3426 0.1480 0.4096 18 6 6.0312 1.3874 -0.4355 19 6 4.6850 1.9696 0.0001 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8574 2.0827 -0.0006 24 1 5.1612 -2.1557 -1.6315 25 1 3.3518 -4.1300 -0.3016 26 1 6.2021 0.3807 1.4652 27 1 7.3734 -0.1617 0.2368 28 1 5.9842 1.1083 -1.4881 29 1 6.8135 2.1326 -0.2913 30 1 4.3827 2.7510 -0.6972 31 1 4.7720 2.3885 1.0026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260407027.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:33 Heat of formation + Delta-G solvation = -55.474764 kcal Electronic energy + Delta-G solvation = -15489.133469 eV Core-core repulsion = 13053.445149 eV Total energy + Delta-G solvation = -2435.688321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.00673 -37.52235 -35.03323 -34.43068 -31.65462 -30.70897 -27.28865 -26.89518 -23.92149 -22.39607 -20.87369 -19.27967 -18.74057 -17.66447 -16.82265 -15.96522 -15.47463 -15.19402 -14.89615 -14.52977 -14.28495 -14.10538 -13.62588 -13.49329 -13.23800 -12.88835 -12.66288 -12.46119 -12.39136 -12.21788 -11.98088 -11.77917 -11.59817 -11.46652 -10.91859 -10.34079 -9.94507 -8.76212 -8.65075 -8.13786 -6.53580 0.72786 1.32651 1.41552 1.51023 1.65341 2.08999 2.22649 2.32193 2.99425 4.03464 4.13896 4.23982 4.31666 4.51817 4.62577 4.70079 4.79860 4.85186 4.92899 4.98064 5.06344 5.09535 5.19991 5.30031 5.46112 5.52454 5.64819 5.79755 5.89444 6.09550 6.25249 6.52627 7.10744 7.33355 8.57225 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.021759 B = 0.014003 C = 0.009576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.492469 B = 1999.079664 C = 2923.341965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.322 4.322 3 C -0.170 4.170 4 C -0.151 4.151 5 C -0.200 4.200 6 S 0.244 5.756 7 C 0.289 3.711 8 O -0.588 6.588 9 C -0.524 4.524 10 H 0.066 0.934 11 C 0.019 3.981 12 N -0.888 5.888 13 Si 0.969 3.031 14 H -0.271 1.271 15 H -0.273 1.273 16 H -0.273 1.273 17 C -0.092 4.092 18 C -0.109 4.109 19 C -0.046 4.046 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.116 0.884 24 H 0.373 0.627 25 H 0.289 0.711 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 4.552 1.022 5.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.439 4.439 3 C -0.200 4.200 4 C -0.164 4.164 5 C -0.319 4.319 6 S 0.509 5.491 7 C 0.248 3.752 8 O -0.396 6.396 9 C -0.561 4.561 10 H 0.084 0.916 11 C -0.174 4.174 12 N -0.535 5.535 13 Si 0.793 3.207 14 H -0.195 1.195 15 H -0.198 1.198 16 H -0.198 1.198 17 C -0.131 4.131 18 C -0.146 4.146 19 C -0.085 4.085 20 H 0.077 0.923 21 H 0.087 0.913 22 H 0.088 0.912 23 H 0.134 0.866 24 H 0.222 0.778 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.575 3.279 1.029 4.294 hybrid contribution -0.177 0.321 0.422 0.559 sum -2.752 3.600 1.451 4.758 Atomic orbital electron populations 1.20098 0.88191 1.01805 1.01975 1.27220 1.02674 1.06628 1.07420 1.19660 0.92404 0.98539 1.09388 1.19833 0.94784 0.94156 1.07630 1.26111 1.00882 0.96443 1.08431 1.86353 0.92930 1.00415 1.69370 1.17563 0.85473 0.90983 0.81197 1.86181 1.60705 1.57784 1.34942 1.22426 1.21232 1.01658 1.10824 0.91608 1.25777 0.93718 1.00944 0.97000 1.67817 1.25062 1.29002 1.31606 0.85293 0.78408 0.78347 0.78652 1.19512 1.19829 1.19788 1.21476 0.98250 0.94198 0.99135 1.21483 0.97118 0.96814 0.99224 1.20454 0.92096 0.94488 1.01447 0.92294 0.91282 0.91221 0.86608 0.77760 0.89903 0.91595 0.92334 0.93405 0.89648 0.90408 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.02 10.37 71.23 0.74 -1.28 16 2 C -0.32 -13.34 6.49 24.51 0.16 -13.18 16 3 C -0.17 -7.08 9.86 21.33 0.21 -6.87 16 4 C -0.15 -6.66 5.78 -19.95 -0.12 -6.77 16 5 C -0.20 -9.75 5.40 25.08 0.14 -9.62 16 6 S 0.24 11.43 18.12 -56.49 -1.02 10.40 16 7 C 0.29 14.37 0.77 -12.01 -0.01 14.36 16 8 O -0.59 -30.83 12.54 -148.98 -1.87 -32.70 16 9 C -0.52 -27.18 8.22 25.60 0.21 -26.97 16 10 H 0.07 3.39 7.75 -2.91 -0.02 3.37 16 11 C 0.02 0.93 4.71 84.65 0.40 1.33 16 12 N -0.89 -43.73 7.12 21.45 0.15 -43.57 16 13 Si 0.97 40.04 29.54 68.60 2.03 42.07 16 14 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 17 C -0.09 -3.92 4.89 30.72 0.15 -3.76 16 18 C -0.11 -3.99 5.87 30.67 0.18 -3.81 16 19 C -0.05 -1.64 6.15 30.36 0.19 -1.45 16 20 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 21 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 22 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 24 H 0.37 19.94 7.16 -74.06 -0.53 19.41 16 25 H 0.29 13.42 8.31 -92.71 -0.77 12.65 16 26 H 0.07 2.73 8.08 -2.39 -0.02 2.71 16 27 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.05 1.92 7.74 -2.39 -0.02 1.90 16 29 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -55.30 261.25 2.13 -53.17 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 0.60 Total: 28.65 kcal Atomic # 6 Polarization: -60.26 SS G_CDS: 2.25 Total: -58.01 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.15 Total: -43.57 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.87 Total: -32.70 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Atomic # 16 Polarization: 11.43 SS G_CDS: -1.02 Total: 10.40 kcal Total: -55.30 2.13 -53.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407027.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.304 kcal (2) G-P(sol) polarization free energy of solvation -55.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds