Wall clock time and date at job start Mon Mar 30 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32908 * 125.20212 * 2 1 4 4 C 1.39220 * 115.69994 * 180.02562 * 3 2 1 5 5 C 1.34633 * 113.66300 * 0.02562 * 4 3 2 6 6 S 1.75718 * 125.20975 * 180.02562 * 2 1 3 7 7 C 1.51410 * 124.78368 * 180.02562 * 5 4 3 8 8 O 1.42901 * 109.59704 * 103.44441 * 7 5 4 9 9 C 1.50696 * 109.59899 * 223.90851 * 7 5 4 10 10 H 1.08005 * 119.99707 * 25.12940 * 9 7 5 11 11 C 1.37873 * 120.00263 * 205.12254 * 9 7 5 12 12 N 1.31516 * 119.99980 * 176.91818 * 11 9 7 13 13 Si 1.86793 * 119.99848 * 356.92524 * 11 9 7 14 14 H 1.48500 * 109.47284 * 84.98300 * 13 11 9 15 15 H 1.48507 * 109.47283 * 204.98079 * 13 11 9 16 16 H 1.48507 * 109.47443 * 324.98065 * 13 11 9 17 17 C 1.53207 * 108.67739 * 343.54901 * 7 5 4 18 18 C 1.53155 * 108.92636 * 49.75935 * 17 7 5 19 19 C 1.52273 * 123.50277 * 179.97438 * 4 3 2 20 20 H 1.09002 * 109.47225 * 90.00013 * 1 2 3 21 21 H 1.08998 * 109.46848 * 209.99588 * 1 2 3 22 22 H 1.08999 * 109.47370 * 329.99442 * 1 2 3 23 23 H 1.07996 * 122.15607 * 359.75610 * 3 2 1 24 24 H 0.96700 * 114.00588 * 54.78281 * 8 7 5 25 25 H 0.97001 * 120.00053 * 180.02562 * 12 11 9 26 26 H 1.09000 * 109.61509 * 289.89909 * 17 7 5 27 27 H 1.09008 * 109.53639 * 169.56875 * 17 7 5 28 28 H 1.08995 * 109.49902 * 169.44513 * 18 17 7 29 29 H 1.09005 * 109.49959 * 49.34716 * 18 17 7 30 30 H 1.09005 * 109.58392 * 282.34843 * 19 4 3 31 31 H 1.08997 * 109.58492 * 42.76433 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2732 1.0860 0.0000 4 6 3.6463 0.8562 -0.0006 5 6 3.9757 -0.4492 -0.0016 6 16 2.5202 -1.4357 -0.0006 7 6 5.3928 -0.9825 -0.0018 8 8 5.7309 -1.4453 1.3072 9 6 5.5058 -2.1170 -0.9872 10 1 4.8246 -2.1758 -1.8233 11 6 6.4787 -3.0797 -0.8216 12 7 6.5391 -4.1023 -1.6464 13 14 7.7109 -2.9318 0.5744 14 1 7.1286 -3.5099 1.8121 15 1 8.9511 -3.6679 0.2202 16 1 8.0329 -1.4998 0.8009 17 6 6.3423 0.1478 -0.4118 18 6 6.0318 1.3879 0.4316 19 6 4.6849 1.9698 -0.0012 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.8575 2.0827 -0.0039 24 1 5.1136 -2.0978 1.6654 25 1 7.2234 -4.7798 -1.5297 26 1 6.2009 0.3797 -1.4674 27 1 7.3732 -0.1617 -0.2397 28 1 6.8139 2.1327 0.2851 29 1 5.9863 1.1097 1.4846 30 1 4.7731 2.3866 -1.0046 31 1 4.3831 2.7513 0.6960 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260407035.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:35 Heat of formation + Delta-G solvation = -33.107096 kcal Electronic energy + Delta-G solvation = -15299.204065 eV Core-core repulsion = 12864.485679 eV Total energy + Delta-G solvation = -2434.718386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.88248 -36.35757 -33.86201 -32.31374 -30.68159 -29.33329 -26.06590 -25.19610 -22.42903 -21.01746 -19.89220 -18.10005 -16.73907 -16.61482 -14.98040 -14.90486 -14.15671 -13.83823 -13.59495 -13.37127 -13.06454 -12.72367 -12.39185 -12.08477 -11.85563 -11.61084 -11.30586 -11.20124 -10.93214 -10.47443 -10.29111 -10.19336 -9.96679 -9.80104 -9.07549 -8.56450 -8.44760 -7.85201 -7.59364 -6.15167 -4.28595 1.63419 2.28580 2.77994 3.22995 3.48122 3.55097 3.72331 4.52512 5.09978 5.12259 5.34633 5.47814 5.57230 5.58980 5.64285 5.68700 5.79129 5.96623 6.06888 6.19126 6.26163 6.38355 6.47359 6.61101 6.81683 6.90658 7.02929 7.12696 7.30523 7.53767 8.16652 8.62706 8.86408 9.45422 10.93587 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.029464 B = 0.010795 C = 0.008769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.070350 B = 2593.240868 C = 3192.374347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.219 4.219 3 C -0.132 4.132 4 C -0.128 4.128 5 C -0.151 4.151 6 S 0.123 5.877 7 C 0.288 3.712 8 O -0.556 6.556 9 C -0.557 4.557 10 H 0.080 0.920 11 C 0.076 3.924 12 N -0.888 5.888 13 Si 0.944 3.056 14 H -0.293 1.293 15 H -0.327 1.327 16 H -0.263 1.263 17 C -0.098 4.098 18 C -0.124 4.124 19 C -0.048 4.048 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.123 0.877 24 H 0.367 0.633 25 H 0.266 0.734 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 9.290 4.477 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.337 4.337 3 C -0.163 4.163 4 C -0.139 4.139 5 C -0.269 4.269 6 S 0.391 5.609 7 C 0.247 3.753 8 O -0.364 6.364 9 C -0.594 4.594 10 H 0.099 0.901 11 C -0.129 4.129 12 N -0.523 5.523 13 Si 0.780 3.220 14 H -0.220 1.220 15 H -0.259 1.259 16 H -0.190 1.190 17 C -0.137 4.137 18 C -0.161 4.161 19 C -0.088 4.088 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.141 0.859 24 H 0.214 0.786 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.066 7.951 4.323 11.482 hybrid contribution 0.337 1.056 0.559 1.241 sum -6.729 9.007 4.882 12.257 Atomic orbital electron populations 1.20196 0.88708 1.02231 1.02002 1.24288 0.99568 0.97525 1.12278 1.19783 0.92638 0.98491 1.05388 1.19566 0.93626 0.94205 1.06548 1.26096 1.00231 0.95216 1.05354 1.84311 0.96088 1.08028 1.72431 1.17954 0.83362 0.92637 0.81339 1.86184 1.53496 1.62046 1.34671 1.21326 1.18728 1.07381 1.11973 0.90149 1.25101 0.97113 0.94121 0.96579 1.69962 1.34036 1.10944 1.37364 0.85791 0.77849 0.78009 0.80352 1.22044 1.25851 1.18955 1.21870 1.00059 0.92755 0.99012 1.21645 0.95533 0.97846 1.01101 1.20433 0.93041 0.94503 1.00783 0.91477 0.91853 0.91436 0.85875 0.78571 0.92457 0.91074 0.91014 0.92683 0.91570 0.91440 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.37 36.01 0.37 -0.53 16 2 C -0.22 -3.61 6.49 -36.15 -0.23 -3.84 16 3 C -0.13 -2.20 9.86 -41.06 -0.41 -2.61 16 4 C -0.13 -2.39 5.78 -104.75 -0.61 -3.00 16 5 C -0.15 -3.17 5.39 -35.24 -0.19 -3.36 16 6 S 0.12 2.38 22.82 -107.50 -2.45 -0.08 16 7 C 0.29 6.66 0.63 -92.47 -0.06 6.60 16 8 O -0.56 -12.65 7.94 -35.23 -0.28 -12.93 16 9 C -0.56 -15.14 8.33 -34.44 -0.29 -15.42 16 10 H 0.08 2.42 8.05 -52.48 -0.42 1.99 16 11 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 13 Si 0.94 23.68 24.45 -169.99 -4.16 19.52 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 H -0.33 -8.39 7.11 56.52 0.40 -7.99 16 16 H -0.26 -6.44 5.17 56.52 0.29 -6.15 16 17 C -0.10 -2.09 4.72 -26.54 -0.13 -2.21 16 18 C -0.12 -2.18 5.87 -26.67 -0.16 -2.34 16 19 C -0.05 -0.78 6.15 -27.12 -0.17 -0.95 16 20 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 24 H 0.37 7.66 8.92 45.56 0.41 8.07 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.07 1.51 8.07 -51.93 -0.42 1.09 16 27 H 0.07 1.60 5.70 -51.92 -0.30 1.31 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.23 7.74 -51.93 -0.40 0.82 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 261.31 15.07 3.94 3.94 Total: -1.00 -30.31 261.31 -7.47 -37.78 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.34 Total: 3.28 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: -1.95 Total: -25.62 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.89 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.28 Total: -12.93 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -4.16 Total: 19.52 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.45 Total: -0.08 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.31 -7.47 -37.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407035.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.672 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds