Wall clock time and date at job start Mon Mar 30 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32908 * 125.20212 * 2 1 4 4 C 1.39220 * 115.69994 * 180.02562 * 3 2 1 5 5 C 1.34633 * 113.66300 * 0.02562 * 4 3 2 6 6 S 1.75718 * 125.20975 * 180.02562 * 2 1 3 7 7 C 1.51410 * 124.78368 * 180.02562 * 5 4 3 8 8 O 1.42901 * 109.59704 * 103.44441 * 7 5 4 9 9 C 1.50696 * 109.59899 * 223.90851 * 7 5 4 10 10 H 1.08005 * 119.99707 * 25.12940 * 9 7 5 11 11 C 1.37873 * 120.00263 * 205.12254 * 9 7 5 12 12 N 1.31516 * 119.99980 * 176.91818 * 11 9 7 13 13 Si 1.86793 * 119.99848 * 356.92524 * 11 9 7 14 14 H 1.48500 * 109.47284 * 84.98300 * 13 11 9 15 15 H 1.48507 * 109.47283 * 204.98079 * 13 11 9 16 16 H 1.48507 * 109.47443 * 324.98065 * 13 11 9 17 17 C 1.53207 * 108.67739 * 343.54901 * 7 5 4 18 18 C 1.53155 * 108.92636 * 49.75935 * 17 7 5 19 19 C 1.52273 * 123.50277 * 179.97438 * 4 3 2 20 20 H 1.09002 * 109.47225 * 90.00013 * 1 2 3 21 21 H 1.08998 * 109.46848 * 209.99588 * 1 2 3 22 22 H 1.08999 * 109.47370 * 329.99442 * 1 2 3 23 23 H 1.07996 * 122.15607 * 359.75610 * 3 2 1 24 24 H 0.96700 * 114.00588 * 54.78281 * 8 7 5 25 25 H 0.97001 * 120.00053 * 180.02562 * 12 11 9 26 26 H 1.09000 * 109.61509 * 289.89909 * 17 7 5 27 27 H 1.09008 * 109.53639 * 169.56875 * 17 7 5 28 28 H 1.08995 * 109.49902 * 169.44513 * 18 17 7 29 29 H 1.09005 * 109.49959 * 49.34716 * 18 17 7 30 30 H 1.09005 * 109.58392 * 282.34843 * 19 4 3 31 31 H 1.08997 * 109.58492 * 42.76433 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2732 1.0860 0.0000 4 6 3.6463 0.8562 -0.0006 5 6 3.9757 -0.4492 -0.0016 6 16 2.5202 -1.4357 -0.0006 7 6 5.3928 -0.9825 -0.0018 8 8 5.7309 -1.4453 1.3072 9 6 5.5058 -2.1170 -0.9872 10 1 4.8246 -2.1758 -1.8233 11 6 6.4787 -3.0797 -0.8216 12 7 6.5391 -4.1023 -1.6464 13 14 7.7109 -2.9318 0.5744 14 1 7.1286 -3.5099 1.8121 15 1 8.9511 -3.6679 0.2202 16 1 8.0329 -1.4998 0.8009 17 6 6.3423 0.1478 -0.4118 18 6 6.0318 1.3879 0.4316 19 6 4.6849 1.9698 -0.0012 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 1.8575 2.0827 -0.0039 24 1 5.1136 -2.0978 1.6654 25 1 7.2234 -4.7798 -1.5297 26 1 6.2009 0.3797 -1.4674 27 1 7.3732 -0.1617 -0.2397 28 1 6.8139 2.1327 0.2851 29 1 5.9863 1.1097 1.4846 30 1 4.7731 2.3866 -1.0046 31 1 4.3831 2.7513 0.6960 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260407035.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:57:35 Heat of formation + Delta-G solvation = -53.367707 kcal Electronic energy + Delta-G solvation = -15300.082631 eV Core-core repulsion = 12864.485679 eV Total energy + Delta-G solvation = -2435.596952 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 238.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.42147 -37.94067 -35.32806 -34.46158 -31.94524 -31.03892 -27.38743 -27.05867 -23.92692 -22.65875 -21.26468 -19.87336 -18.53907 -18.13766 -16.96875 -16.51249 -15.64387 -15.27103 -15.08538 -14.75782 -14.59713 -14.29355 -13.91763 -13.65858 -13.42692 -13.14514 -12.86021 -12.71717 -12.52505 -12.22978 -11.90768 -11.67698 -11.57861 -11.40544 -11.05881 -10.57102 -10.31575 -9.28425 -9.04452 -8.35601 -6.49892 0.22234 0.87890 1.35898 1.45222 1.48324 1.69495 1.88463 2.42423 2.98221 3.63580 3.87762 4.05735 4.23490 4.28009 4.38037 4.53473 4.69417 4.76175 4.78849 4.90440 4.95217 5.03604 5.12141 5.19923 5.29484 5.39831 5.45617 5.62061 5.71076 5.83839 6.04438 6.56580 6.84565 7.27998 8.77403 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.029464 B = 0.010795 C = 0.008769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.070350 B = 2593.240868 C = 3192.374347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.194 4.194 3 C -0.143 4.143 4 C -0.115 4.115 5 C -0.197 4.197 6 S 0.064 5.936 7 C 0.289 3.711 8 O -0.558 6.558 9 C -0.547 4.547 10 H 0.037 0.963 11 C 0.025 3.975 12 N -0.937 5.937 13 Si 1.002 2.998 14 H -0.285 1.285 15 H -0.336 1.336 16 H -0.252 1.252 17 C -0.101 4.101 18 C -0.116 4.116 19 C -0.048 4.048 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.096 0.904 23 H 0.161 0.839 24 H 0.372 0.628 25 H 0.266 0.734 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.440 12.391 5.830 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.312 4.312 3 C -0.173 4.173 4 C -0.127 4.127 5 C -0.314 4.314 6 S 0.332 5.668 7 C 0.248 3.752 8 O -0.366 6.366 9 C -0.585 4.585 10 H 0.056 0.944 11 C -0.174 4.174 12 N -0.575 5.575 13 Si 0.835 3.165 14 H -0.213 1.213 15 H -0.268 1.268 16 H -0.177 1.177 17 C -0.140 4.140 18 C -0.153 4.153 19 C -0.087 4.087 20 H 0.098 0.902 21 H 0.088 0.912 22 H 0.115 0.885 23 H 0.179 0.821 24 H 0.220 0.780 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.231 11.072 5.685 14.922 hybrid contribution 0.541 0.142 0.072 0.564 sum -7.690 11.214 5.758 14.767 Atomic orbital electron populations 1.20380 0.85562 1.03993 1.03358 1.24785 1.01273 0.95368 1.09746 1.20114 0.91657 1.00195 1.05309 1.20084 0.95429 0.93794 1.03401 1.25748 0.99139 0.96458 1.10100 1.84436 0.97548 1.11031 1.73809 1.17766 0.85815 0.91599 0.80059 1.86118 1.53936 1.62240 1.34329 1.21524 1.16798 1.08751 1.11407 0.94449 1.25851 0.98944 0.93902 0.98738 1.70085 1.35391 1.12301 1.39733 0.84852 0.75426 0.78352 0.77822 1.21268 1.26838 1.17702 1.21808 0.98602 0.94208 0.99428 1.21581 0.97566 0.96587 0.99598 1.20574 0.91257 0.94271 1.02578 0.90189 0.91200 0.88530 0.82115 0.78002 0.92501 0.91836 0.92508 0.89685 0.92340 0.89918 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.37 71.24 0.74 -0.82 16 2 C -0.19 -5.86 6.49 24.51 0.16 -5.70 16 3 C -0.14 -4.22 9.86 21.33 0.21 -4.01 16 4 C -0.11 -3.97 5.78 -19.95 -0.12 -4.09 16 5 C -0.20 -8.19 5.39 25.09 0.14 -8.06 16 6 S 0.06 2.50 22.82 -56.49 -1.29 1.21 16 7 C 0.29 13.40 0.63 -11.99 -0.01 13.40 16 8 O -0.56 -25.17 7.94 -148.98 -1.18 -26.35 16 9 C -0.55 -30.92 8.33 25.60 0.21 -30.71 16 10 H 0.04 2.38 8.05 -2.91 -0.02 2.36 16 11 C 0.03 1.47 5.47 84.65 0.46 1.93 16 12 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 13 Si 1.00 49.78 24.45 68.60 1.68 51.46 16 14 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 15 H -0.34 -17.05 7.11 99.48 0.71 -16.34 16 16 H -0.25 -11.90 5.17 99.48 0.51 -11.39 16 17 C -0.10 -4.24 4.72 30.72 0.15 -4.09 16 18 C -0.12 -3.73 5.87 30.64 0.18 -3.55 16 19 C -0.05 -1.35 6.15 30.34 0.19 -1.16 16 20 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 24 H 0.37 15.67 8.92 -74.06 -0.66 15.01 16 25 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.06 2.69 8.07 -2.39 -0.02 2.67 16 27 H 0.06 2.49 5.70 -2.38 -0.01 2.48 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 1.99 7.74 -2.38 -0.02 1.97 16 30 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -67.90 261.31 2.10 -65.81 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.28 Total: 13.21 kcal Atomic # 6 Polarization: -49.17 SS G_CDS: 2.31 Total: -46.86 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.18 Total: -26.35 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.68 Total: 51.46 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.29 Total: 1.21 kcal Total: -67.90 2.10 -65.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407035.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.439 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds