Wall clock time and date at job start Mon Mar 30 2020 05:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00255 * 2 1 4 4 H 1.48505 * 109.47235 * 270.00004 * 3 2 1 5 5 H 1.48505 * 109.47290 * 30.00186 * 3 2 1 6 6 H 1.48496 * 109.47240 * 150.00175 * 3 2 1 7 7 C 1.37877 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00146 * 187.62322 * 7 2 1 9 9 C 1.50702 * 120.00152 * 7.62418 * 7 2 1 10 10 C 1.50699 * 115.54857 * 275.20550 * 9 7 2 11 11 C 1.38264 * 119.93810 * 114.70874 * 10 9 7 12 12 C 1.38219 * 120.15934 * 179.72078 * 11 10 9 13 13 C 1.38624 * 120.03598 * 0.55748 * 12 11 10 14 14 O 1.36000 * 120.06266 * 179.74349 * 13 12 11 15 15 C 1.39058 * 119.88208 * 359.71659 * 13 12 11 16 16 O 1.36047 * 120.08170 * 179.97438 * 15 13 12 17 17 C 1.38411 * 119.93954 * 294.98232 * 10 9 7 18 18 F 1.35102 * 120.02355 * 0.02562 * 17 10 9 19 19 C 1.52998 * 117.49919 * 129.53788 * 9 7 2 20 20 C 1.52999 * 117.49834 * 60.87843 * 9 7 2 21 21 H 0.97007 * 119.99939 * 354.98578 * 1 2 3 22 22 H 1.07996 * 119.92085 * 359.97438 * 11 10 9 23 23 H 1.07998 * 119.98202 * 180.27687 * 12 11 10 24 24 H 0.96695 * 113.99912 * 269.98129 * 14 13 12 25 25 H 0.96701 * 114.00441 * 270.02776 * 16 15 13 26 26 H 1.08999 * 117.49859 * 0.02562 * 19 9 7 27 27 H 1.09005 * 117.50104 * 145.01917 * 19 9 7 28 28 H 1.08999 * 117.49791 * 214.97629 * 20 9 7 29 29 H 1.08994 * 117.50335 * 0.02562 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0773 -1.1984 0.1235 9 6 1.2608 -2.4933 -0.1743 10 6 0.6782 -3.0821 1.0847 11 6 -0.6931 -3.1857 1.2276 12 6 -1.2323 -3.7303 2.3779 13 6 -0.3986 -4.1638 3.3971 14 8 -0.9287 -4.6949 4.5314 15 6 0.9806 -4.0552 3.2575 16 8 1.8025 -4.4789 4.2554 17 6 1.5167 -3.5130 2.0981 18 9 2.8562 -3.4052 1.9589 19 6 1.7774 -3.4664 -1.2359 20 6 0.4791 -2.6915 -1.4744 21 1 -0.4850 0.8369 0.0734 22 1 -1.3445 -2.8441 0.4368 23 1 -2.3037 -3.8139 2.4846 24 1 -1.1086 -4.0441 5.2236 25 1 2.0133 -3.7968 4.9077 26 1 2.6553 -3.1671 -1.8084 27 1 1.6955 -4.5325 -1.0240 28 1 -0.4565 -3.2481 -1.4193 29 1 0.5028 -1.8824 -2.2044 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260418630.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:36 Heat of formation + Delta-G solvation = -102.047083 kcal Electronic energy + Delta-G solvation = -17001.581238 eV Core-core repulsion = 13997.660214 eV Total energy + Delta-G solvation = -3003.921024 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.65221 -40.96157 -38.91444 -37.81736 -36.43575 -34.00811 -30.78913 -30.01040 -27.65713 -24.25515 -23.87386 -22.64732 -21.35697 -19.85073 -18.92356 -18.32866 -17.90513 -17.02022 -16.69902 -16.62702 -16.11673 -15.68181 -15.21794 -14.98024 -14.62273 -14.15998 -13.57257 -13.28364 -12.98952 -12.88800 -12.68204 -12.42723 -12.21808 -12.03821 -11.64412 -11.22498 -11.08351 -10.50596 -10.14949 -9.54634 -9.23783 -8.11601 -6.24123 0.16862 0.23987 1.39587 1.42592 1.50899 2.40362 2.52524 2.95559 3.14367 3.17582 3.44904 3.72128 4.01446 4.16316 4.30751 4.51881 4.60936 4.80784 4.90124 4.95011 5.11223 5.20230 5.28394 5.49495 5.58960 5.65174 5.76427 5.91839 6.35435 6.57015 6.77829 6.92756 7.42672 8.93934 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.025815 B = 0.009044 C = 0.008823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.391786 B = 3095.336861 C = 3172.610722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.037 3.963 3 Si 0.945 3.055 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.045 0.955 9 C 0.045 3.955 10 C -0.048 4.048 11 C -0.078 4.078 12 C -0.134 4.134 13 C 0.090 3.910 14 O -0.488 6.488 15 C 0.033 3.967 16 O -0.490 6.490 17 C 0.065 3.935 18 F -0.143 7.143 19 C -0.190 4.190 20 C -0.145 4.145 21 H 0.263 0.737 22 H 0.135 0.865 23 H 0.162 0.838 24 H 0.407 0.593 25 H 0.402 0.598 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.270 -4.429 6.459 8.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.165 4.165 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.063 0.937 9 C 0.044 3.956 10 C -0.049 4.049 11 C -0.096 4.096 12 C -0.152 4.152 13 C 0.045 3.955 14 O -0.301 6.301 15 C -0.013 4.013 16 O -0.301 6.301 17 C 0.045 3.955 18 F -0.122 7.122 19 C -0.227 4.227 20 C -0.183 4.183 21 H 0.072 0.928 22 H 0.153 0.847 23 H 0.180 0.820 24 H 0.266 0.734 25 H 0.260 0.740 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.358 -5.355 5.807 8.583 hybrid contribution 0.900 1.987 0.427 2.223 sum -2.457 -3.368 6.234 7.499 Atomic orbital electron populations 1.70033 1.06489 1.27474 1.48423 1.25547 0.95704 1.01321 0.93970 0.85767 0.78792 0.80020 0.78293 1.20060 1.20451 1.20193 1.20522 0.92655 0.89813 1.51943 0.93704 1.17599 0.99263 0.93795 0.84904 1.19888 0.93619 0.95076 0.96333 1.20907 0.93378 0.96945 0.98345 1.21548 1.01421 0.99152 0.93077 1.18245 0.88345 0.99075 0.89851 1.84827 1.83109 1.37540 1.24609 1.18715 0.89853 1.03210 0.89533 1.84851 1.66862 1.40680 1.37706 1.18042 0.77556 1.03426 0.96471 1.91401 1.30460 1.94212 1.96093 1.23050 0.98137 0.96262 1.05258 1.22539 0.93663 1.00810 1.01249 0.92771 0.84730 0.82017 0.73391 0.74002 0.90083 0.89926 0.89608 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.28 12.98 21.45 0.28 -47.00 15 2 C 0.04 1.96 5.38 84.66 0.46 2.42 15 3 Si 0.95 42.39 29.55 68.60 2.03 44.42 15 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 15 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 7 C -0.51 -27.85 8.48 25.60 0.22 -27.63 15 8 H 0.04 2.54 7.83 -2.91 -0.02 2.51 15 9 C 0.04 2.18 1.18 -53.67 -0.06 2.12 15 10 C -0.05 -2.15 5.12 -19.82 -0.10 -2.25 15 11 C -0.08 -3.03 9.22 22.27 0.21 -2.82 15 12 C -0.13 -4.28 9.98 22.36 0.22 -4.06 15 13 C 0.09 2.91 6.72 22.56 0.15 3.06 15 14 O -0.49 -12.60 13.29 -79.64 -1.06 -13.66 15 15 C 0.03 1.22 6.72 22.59 0.15 1.37 15 16 O -0.49 -15.86 13.15 -80.17 -1.05 -16.92 15 17 C 0.06 2.84 7.18 22.44 0.16 3.00 15 18 F -0.14 -6.73 16.40 44.97 0.74 -5.99 15 19 C -0.19 -8.31 9.94 30.62 0.30 -8.00 15 20 C -0.15 -6.51 8.99 30.62 0.28 -6.24 15 21 H 0.26 13.37 8.32 -92.70 -0.77 12.60 15 22 H 0.13 5.26 7.00 -2.91 -0.02 5.24 15 23 H 0.16 4.04 8.06 -2.91 -0.02 4.02 15 24 H 0.41 6.05 9.06 -74.06 -0.67 5.38 15 25 H 0.40 8.87 9.07 -74.06 -0.67 8.20 15 26 H 0.08 3.51 8.14 -2.39 -0.02 3.49 15 27 H 0.08 3.31 8.14 -2.38 -0.02 3.29 15 28 H 0.09 3.47 7.12 -2.39 -0.02 3.45 15 29 H 0.07 3.24 8.14 -2.39 -0.02 3.22 15 Total: -1.00 -64.11 266.47 2.78 -61.34 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -0.13 Total: 16.84 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 1.98 Total: -39.03 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.28 Total: -47.00 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -2.11 Total: -30.58 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.74 Total: -5.99 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -64.11 2.78 -61.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260418630.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.710 kcal (2) G-P(sol) polarization free energy of solvation -64.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds