Wall clock time and date at job start Mon Mar 30 2020 05:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00088 * 2 1 4 4 H 1.48500 * 109.46747 * 240.00266 * 3 2 1 5 5 H 1.48495 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47245 * 119.99946 * 3 2 1 7 7 C 1.37878 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47573 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.76234 * 54.54827 * 10 9 7 12 12 O 1.43260 * 109.61883 * 175.00307 * 10 9 7 13 13 C 1.43077 * 113.02278 * 185.22828 * 12 10 9 14 14 C 1.50790 * 109.33225 * 311.38940 * 13 12 10 15 15 C 1.38192 * 119.67450 * 195.89671 * 14 13 12 16 16 C 1.38399 * 120.10652 * 180.08631 * 15 14 13 17 17 F 1.35094 * 119.98705 * 180.02562 * 16 15 14 18 18 C 1.38482 * 120.02633 * 0.09156 * 16 15 14 19 19 C 1.38092 * 120.00818 * 359.93905 * 18 16 15 20 20 C 1.38646 * 120.38206 * 16.01655 * 14 13 12 21 21 O 1.36032 * 120.55406 * 359.76451 * 20 14 13 22 22 H 0.96998 * 120.00023 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46485 * 59.99897 * 9 7 2 24 24 H 1.08997 * 109.46961 * 300.00542 * 9 7 2 25 25 H 1.09002 * 109.49943 * 71.35803 * 13 12 10 26 26 H 1.09000 * 109.50096 * 191.42792 * 13 12 10 27 27 H 1.08000 * 119.93932 * 0.13057 * 15 14 13 28 28 H 1.07998 * 119.99375 * 179.97438 * 18 16 15 29 29 H 1.07996 * 119.98109 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9370 -3.5556 0.8351 12 8 1.5361 -4.9013 0.1170 13 6 2.4030 -6.0323 0.2441 14 6 3.4677 -5.9675 -0.8218 15 6 4.2128 -7.0941 -1.1139 16 6 5.1934 -7.0441 -2.0892 17 9 5.9201 -8.1470 -2.3732 18 6 5.4310 -5.8637 -2.7732 19 6 4.6886 -4.7360 -2.4832 20 6 3.7034 -4.7851 -1.5064 21 8 2.9757 -3.6694 -1.2305 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -6.0225 1.2280 26 1 1.8251 -6.9489 0.1257 27 1 4.0290 -8.0151 -0.5807 28 1 6.1967 -5.8252 -3.5339 29 1 4.8745 -3.8155 -3.0166 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260441085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:25 Heat of formation + Delta-G solvation = -113.058302 kcal Electronic energy + Delta-G solvation = -16412.650270 eV Core-core repulsion = 13408.251764 eV Total energy + Delta-G solvation = -3004.398506 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.80017 -40.57012 -37.58534 -35.93458 -33.34218 -31.85455 -30.50182 -28.65811 -26.18559 -24.70908 -22.77394 -21.88373 -20.46875 -18.41082 -17.33858 -16.88205 -16.56703 -15.62224 -15.50306 -14.88451 -14.83835 -14.39793 -14.13602 -13.80972 -13.52552 -13.22428 -12.64327 -12.24948 -11.90536 -11.62251 -11.37996 -11.09872 -10.75152 -10.69567 -10.41227 -9.90903 -9.63094 -9.36691 -8.95033 -8.48365 -7.92356 -6.11535 -4.15069 1.11221 1.27440 3.29749 3.33997 3.36227 3.45812 3.71996 3.99168 4.24395 4.42006 4.61768 4.72942 5.00918 5.21227 5.25750 5.42754 5.46758 5.53151 5.70570 5.86901 6.02539 6.14937 6.18010 6.45257 6.72281 7.05687 7.35934 7.57418 7.80491 7.88349 8.18878 8.87690 9.48463 11.00010 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.041088 B = 0.005899 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.304465 B = 4745.521394 C = 5284.185697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.038 3.962 10 C 0.252 3.748 11 H 0.065 0.935 12 O -0.385 6.385 13 C 0.100 3.900 14 C -0.184 4.184 15 C -0.108 4.108 16 C 0.049 3.951 17 F -0.146 7.146 18 C -0.115 4.115 19 C -0.125 4.125 20 C 0.141 3.859 21 O -0.302 6.302 22 H 0.264 0.736 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.440 -12.136 -1.785 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.079 0.921 9 C 0.001 3.999 10 C 0.160 3.840 11 H 0.083 0.917 12 O -0.305 6.305 13 C 0.023 3.977 14 C -0.186 4.186 15 C -0.127 4.127 16 C 0.029 3.971 17 F -0.125 7.125 18 C -0.134 4.134 19 C -0.144 4.144 20 C 0.094 3.906 21 O -0.217 6.217 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.154 0.846 28 H 0.157 0.843 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.054 -11.867 -1.886 14.466 hybrid contribution 0.842 0.484 0.039 0.971 sum 8.896 -11.383 -1.847 14.565 Atomic orbital electron populations 1.69949 1.06075 1.27189 1.49791 1.24963 0.94900 0.99373 0.94904 0.86519 0.79472 0.82470 0.78761 1.20034 1.21164 1.20126 1.20904 0.93160 0.89832 1.52037 0.92133 1.19213 0.92860 0.87970 0.99875 1.24755 0.91224 0.85557 0.82420 0.91705 1.88378 1.33435 1.15739 1.92902 1.21444 0.90157 0.91088 0.94976 1.20292 1.01697 0.93541 1.03024 1.20601 0.95569 0.98761 0.97788 1.17413 0.95622 0.83757 1.00263 1.91459 1.76315 1.51660 1.93030 1.20919 1.00883 0.91159 1.00461 1.20465 0.95060 0.99420 0.99425 1.18889 0.90862 0.86390 0.94487 1.86561 1.58050 1.34344 1.42698 0.92598 0.94353 0.93219 0.91311 0.87388 0.84620 0.84333 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 13.29 55.43 0.74 -25.37 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 15 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 7 C -0.52 -14.39 8.90 -34.44 -0.31 -14.70 15 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 15 9 C 0.04 0.97 5.06 -27.89 -0.14 0.83 15 10 C 0.25 5.47 3.29 37.15 0.12 5.59 15 11 H 0.07 1.33 8.12 -51.93 -0.42 0.91 15 12 O -0.38 -7.59 10.62 -59.11 -0.63 -8.22 15 13 C 0.10 1.48 6.87 36.05 0.25 1.73 15 14 C -0.18 -2.86 5.82 -104.44 -0.61 -3.47 15 15 C -0.11 -1.43 9.69 -39.54 -0.38 -1.81 15 16 C 0.05 0.65 7.30 -39.43 -0.29 0.37 15 17 F -0.15 -1.92 17.27 2.25 0.04 -1.88 15 18 C -0.12 -1.49 10.02 -39.55 -0.40 -1.89 15 19 C -0.13 -1.88 9.97 -39.42 -0.39 -2.27 15 20 C 0.14 2.50 6.56 -39.21 -0.26 2.25 15 21 O -0.30 -6.51 9.90 -43.73 -0.43 -6.94 15 22 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 23 H 0.04 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.05 1.32 8.14 -51.93 -0.42 0.90 15 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 15 26 H 0.11 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.14 1.41 8.06 -52.49 -0.42 0.99 15 28 H 0.14 1.41 8.06 -52.49 -0.42 0.98 15 29 H 0.14 1.98 8.06 -52.49 -0.42 1.55 15 LS Contribution 261.79 15.07 3.95 3.95 Total: -1.00 -29.95 261.79 -6.78 -36.73 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -2.92 Total: -2.69 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -2.50 Total: -11.77 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.74 Total: -25.37 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -1.06 Total: -15.16 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.95 -6.78 -36.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.326 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds