Wall clock time and date at job start Mon Mar 30 2020 05:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 120.00088 * 2 1 4 4 H 1.48500 * 109.46747 * 240.00266 * 3 2 1 5 5 H 1.48495 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47245 * 119.99946 * 3 2 1 7 7 C 1.37878 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47573 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.76234 * 54.54827 * 10 9 7 12 12 O 1.43260 * 109.61883 * 175.00307 * 10 9 7 13 13 C 1.43077 * 113.02278 * 185.22828 * 12 10 9 14 14 C 1.50790 * 109.33225 * 311.38940 * 13 12 10 15 15 C 1.38192 * 119.67450 * 195.89671 * 14 13 12 16 16 C 1.38399 * 120.10652 * 180.08631 * 15 14 13 17 17 F 1.35094 * 119.98705 * 180.02562 * 16 15 14 18 18 C 1.38482 * 120.02633 * 0.09156 * 16 15 14 19 19 C 1.38092 * 120.00818 * 359.93905 * 18 16 15 20 20 C 1.38646 * 120.38206 * 16.01655 * 14 13 12 21 21 O 1.36032 * 120.55406 * 359.76451 * 20 14 13 22 22 H 0.96998 * 120.00023 * 0.02562 * 1 2 3 23 23 H 1.09003 * 109.46485 * 59.99897 * 9 7 2 24 24 H 1.08997 * 109.46961 * 300.00542 * 9 7 2 25 25 H 1.09002 * 109.49943 * 71.35803 * 13 12 10 26 26 H 1.09000 * 109.50096 * 191.42792 * 13 12 10 27 27 H 1.08000 * 119.93932 * 0.13057 * 15 14 13 28 28 H 1.07998 * 119.99375 * 179.97438 * 18 16 15 29 29 H 1.07996 * 119.98109 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9370 -3.5556 0.8351 12 8 1.5361 -4.9013 0.1170 13 6 2.4030 -6.0323 0.2441 14 6 3.4677 -5.9675 -0.8218 15 6 4.2128 -7.0941 -1.1139 16 6 5.1934 -7.0441 -2.0892 17 9 5.9201 -8.1470 -2.3732 18 6 5.4310 -5.8637 -2.7732 19 6 4.6886 -4.7360 -2.4832 20 6 3.7034 -4.7851 -1.5064 21 8 2.9757 -3.6694 -1.2305 22 1 -0.4850 0.8400 -0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -6.0225 1.2280 26 1 1.8251 -6.9489 0.1257 27 1 4.0290 -8.0151 -0.5807 28 1 6.1967 -5.8252 -3.5339 29 1 4.8745 -3.8155 -3.0166 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260441085.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:25 Heat of formation + Delta-G solvation = -130.992776 kcal Electronic energy + Delta-G solvation = -16413.427967 eV Core-core repulsion = 13408.251764 eV Total energy + Delta-G solvation = -3005.176203 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.85576 -41.91678 -38.86909 -37.37062 -35.38468 -33.11775 -32.11966 -30.15557 -27.43502 -26.53862 -23.99600 -23.50157 -21.87136 -19.83297 -18.76418 -18.35184 -18.02358 -17.14804 -16.67597 -16.57382 -16.09058 -15.75606 -15.45331 -15.22127 -14.70442 -14.39894 -14.28079 -13.98541 -13.51387 -13.17205 -12.94203 -12.61432 -12.58044 -12.24374 -12.03642 -11.54182 -11.41852 -11.17394 -10.62665 -10.03881 -9.16691 -8.25209 -6.36919 0.01606 0.12247 1.41794 1.45450 1.53382 2.16693 2.32765 2.44818 2.66688 3.10338 3.14158 3.53306 3.64303 3.77922 4.00980 4.20891 4.32046 4.35720 4.50695 4.52418 4.78229 4.95205 5.06405 5.19960 5.22585 5.29828 5.64055 5.68122 5.87408 6.04079 6.41860 6.73607 7.31425 8.87379 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.041088 B = 0.005899 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.304465 B = 4745.521394 C = 5284.185697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.042 3.958 10 C 0.266 3.734 11 H 0.074 0.926 12 O -0.405 6.405 13 C 0.091 3.909 14 C -0.189 4.189 15 C -0.100 4.100 16 C 0.052 3.948 17 F -0.141 7.141 18 C -0.106 4.106 19 C -0.130 4.130 20 C 0.097 3.903 21 O -0.333 6.333 22 H 0.267 0.733 23 H 0.003 0.997 24 H 0.031 0.969 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.169 0.831 28 H 0.170 0.830 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.423 -13.294 -1.879 16.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.005 3.995 10 C 0.173 3.827 11 H 0.091 0.909 12 O -0.326 6.326 13 C 0.016 3.984 14 C -0.190 4.190 15 C -0.119 4.119 16 C 0.033 3.967 17 F -0.119 7.119 18 C -0.125 4.125 19 C -0.148 4.148 20 C 0.051 3.949 21 O -0.249 6.249 22 H 0.076 0.924 23 H 0.021 0.979 24 H 0.049 0.951 25 H 0.109 0.891 26 H 0.158 0.842 27 H 0.186 0.814 28 H 0.187 0.813 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.057 -13.059 -1.982 16.602 hybrid contribution 0.276 0.663 0.013 0.719 sum 10.334 -12.395 -1.969 16.258 Atomic orbital electron populations 1.70082 1.07803 1.28297 1.50686 1.25935 0.95791 1.03340 0.94244 0.85397 0.78203 0.77551 0.79293 1.19366 1.20601 1.18754 1.21246 0.93485 0.90896 1.51897 0.91809 1.18958 0.93288 0.90034 0.97238 1.24074 0.90207 0.85199 0.83203 0.90891 1.88309 1.34873 1.16321 1.93102 1.21873 0.90252 0.90201 0.96062 1.20400 1.02162 0.93444 1.02978 1.20851 0.94514 0.99033 0.97454 1.17559 0.95307 0.83900 0.99929 1.91483 1.76135 1.51388 1.92940 1.21191 1.00633 0.90114 1.00522 1.20625 0.94730 1.00556 0.98903 1.19333 0.92403 0.86296 0.96857 1.86459 1.59239 1.36619 1.42587 0.92381 0.97877 0.95087 0.89060 0.84213 0.81382 0.81280 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.29 21.45 0.28 -55.65 15 2 C 0.01 0.32 5.46 84.65 0.46 0.78 15 3 Si 0.97 43.74 29.54 68.60 2.03 45.76 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 7 C -0.54 -30.53 8.90 25.60 0.23 -30.30 15 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 15 9 C 0.04 2.27 5.06 29.85 0.15 2.42 15 10 C 0.27 11.86 3.29 71.98 0.24 12.10 15 11 H 0.07 3.07 8.12 -2.39 -0.02 3.05 15 12 O -0.41 -16.16 10.62 -126.14 -1.34 -17.50 15 13 C 0.09 2.55 6.87 71.26 0.49 3.04 15 14 C -0.19 -5.52 5.82 -19.75 -0.11 -5.64 15 15 C -0.10 -2.30 9.69 22.30 0.22 -2.09 15 16 C 0.05 1.23 7.30 22.37 0.16 1.39 15 17 F -0.14 -3.18 17.27 44.97 0.78 -2.40 15 18 C -0.11 -2.45 10.02 22.29 0.22 -2.22 15 19 C -0.13 -3.75 9.97 22.37 0.22 -3.52 15 20 C 0.10 3.40 6.56 22.51 0.15 3.55 15 21 O -0.33 -14.76 9.90 -71.08 -0.70 -15.46 15 22 H 0.27 15.07 8.31 -92.71 -0.77 14.29 15 23 H 0.00 0.17 8.14 -2.39 -0.02 0.15 15 24 H 0.03 1.75 8.14 -2.39 -0.02 1.73 15 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15 26 H 0.14 2.95 8.14 -2.39 -0.02 2.93 15 27 H 0.17 2.72 8.06 -2.91 -0.02 2.70 15 28 H 0.17 2.80 8.06 -2.91 -0.02 2.77 15 29 H 0.15 4.00 8.06 -2.91 -0.02 3.98 15 Total: -1.00 -66.31 261.79 4.63 -61.68 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: 1.16 Total: 4.05 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 2.43 Total: -20.48 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.28 Total: -55.65 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -2.04 Total: -32.96 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -66.31 4.63 -61.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260441085.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.308 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds