Wall clock time and date at job start Mon Mar 30 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 111.00152 * 2 1 4 4 S 1.83294 * 111.10018 * 124.15467 * 2 1 3 5 5 C 1.77444 * 96.61078 * 93.10358 * 4 2 1 6 6 C 1.38789 * 130.54240 * 195.41660 * 5 4 2 7 7 C 1.38041 * 120.20130 * 179.64545 * 6 5 4 8 8 C 1.38491 * 119.26700 * 0.19470 * 7 6 5 9 9 F 1.35102 * 119.75554 * 179.87138 * 8 7 6 10 10 C 1.37872 * 120.48646 * 359.59224 * 8 7 6 11 11 C 1.38858 * 108.27516 * 15.24147 * 5 4 2 12 12 C 1.50882 * 115.38325 * 0.66202 * 11 5 4 13 13 H 1.08998 * 109.27747 * 99.72613 * 12 11 5 14 14 C 1.50692 * 109.21568 * 219.20903 * 12 11 5 15 15 H 1.08006 * 119.99803 * 36.15351 * 14 12 11 16 16 C 1.37878 * 120.00125 * 216.15354 * 14 12 11 17 17 N 1.31516 * 119.99740 * 5.12378 * 16 14 12 18 18 Si 1.86805 * 119.99958 * 185.12462 * 16 14 12 19 19 H 1.48502 * 109.46860 * 90.00139 * 18 16 14 20 20 H 1.48496 * 109.46697 * 209.99719 * 18 16 14 21 21 H 1.48499 * 109.47036 * 329.99930 * 18 16 14 22 22 H 1.09001 * 109.47075 * 291.93140 * 1 2 3 23 23 H 1.09000 * 109.47465 * 51.92937 * 1 2 3 24 24 H 1.08995 * 109.47475 * 171.93157 * 1 2 3 25 25 H 1.08009 * 119.89790 * 359.66816 * 6 5 4 26 26 H 1.08005 * 120.36404 * 179.97438 * 7 6 5 27 27 H 1.07998 * 119.48437 * 180.31481 * 10 8 7 28 28 H 0.97005 * 119.99736 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9206 1.0176 0.0000 4 16 2.1898 -0.9601 1.4151 5 6 2.3524 -2.5043 0.5562 6 6 2.5315 -3.7921 1.0417 7 6 2.6259 -4.8567 0.1681 8 6 2.5440 -4.6236 -1.1946 9 9 2.6378 -5.6579 -2.0586 10 6 2.3617 -3.3444 -1.6757 11 6 2.2676 -2.2552 -0.8072 12 6 2.0848 -0.8073 -1.1901 13 1 3.0460 -0.3904 -1.4907 14 6 1.1208 -0.7175 -2.3448 15 1 0.2829 -1.3966 -2.4028 16 6 1.3083 0.2315 -3.3273 17 7 2.3818 0.9911 -3.3114 18 14 0.0376 0.4383 -4.6808 19 1 -0.9779 1.4360 -4.2582 20 1 0.7069 0.9078 -5.9204 21 1 -0.6263 -0.8646 -4.9397 22 1 -0.3633 0.3838 0.9533 23 1 -0.3634 0.6337 -0.8090 24 1 -0.3634 -1.0174 -0.1442 25 1 2.5969 -3.9618 2.1064 26 1 2.7658 -5.8599 0.5430 27 1 2.2949 -3.1818 -2.7413 28 1 2.5135 1.6590 -4.0024 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260447220.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:57 Heat of formation + Delta-G solvation = -31.890460 kcal Electronic energy + Delta-G solvation = -14589.505472 eV Core-core repulsion = 12031.379539 eV Total energy + Delta-G solvation = -2558.125933 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.42571 -38.68205 -35.23959 -32.06706 -30.40296 -29.81137 -26.73426 -24.63221 -22.21969 -21.87927 -19.83912 -17.21628 -16.53880 -16.18680 -15.67649 -15.11421 -14.76480 -14.39124 -13.85261 -13.34237 -12.99510 -12.62389 -12.37449 -12.27493 -11.85841 -11.43701 -11.15482 -11.07104 -10.70732 -10.50337 -10.39384 -9.86741 -9.53493 -9.15667 -8.86651 -8.71518 -8.25383 -6.76390 -6.28172 -4.32742 1.58115 1.76255 2.36025 3.00462 3.18427 3.25871 3.28949 4.04215 4.25892 4.72256 5.02158 5.18482 5.36754 5.69728 5.83604 5.87903 5.98423 6.20441 6.33577 6.43863 6.57781 6.61602 6.70977 6.89313 7.04065 7.10843 7.28923 7.41568 7.65452 8.00840 8.73214 9.30991 10.79873 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.010751 C = 0.007892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.305431 B = 2603.814959 C = 3547.213984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.020 4.020 3 H 0.105 0.895 4 S -0.214 6.214 5 C -0.101 4.101 6 C -0.070 4.070 7 C -0.162 4.162 8 C 0.085 3.915 9 F -0.149 7.149 10 C -0.123 4.123 11 C -0.021 4.021 12 C 0.057 3.943 13 H 0.095 0.905 14 C -0.506 4.506 15 H 0.063 0.937 16 C 0.070 3.930 17 N -0.886 5.886 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.271 1.271 22 H 0.037 0.963 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.125 0.875 26 H 0.131 0.869 27 H 0.139 0.861 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -5.249 5.339 7.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.148 4.148 3 H 0.123 0.877 4 S 0.029 5.971 5 C -0.213 4.213 6 C -0.094 4.094 7 C -0.183 4.183 8 C 0.064 3.936 9 F -0.127 7.127 10 C -0.143 4.143 11 C -0.026 4.026 12 C 0.038 3.962 13 H 0.113 0.887 14 C -0.545 4.545 15 H 0.081 0.919 16 C -0.134 4.134 17 N -0.523 5.523 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.196 1.196 22 H 0.056 0.944 23 H 0.093 0.907 24 H 0.072 0.928 25 H 0.143 0.857 26 H 0.149 0.851 27 H 0.156 0.844 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.459 -4.647 6.464 7.975 hybrid contribution -0.793 -0.428 -2.125 2.308 sum -1.251 -5.075 4.340 6.794 Atomic orbital electron populations 1.21679 0.93009 1.02351 0.99932 1.24515 0.98804 1.00595 0.90857 0.87719 1.85553 1.82017 1.05110 1.24385 1.22102 1.06590 0.96137 0.96502 1.20081 1.00604 0.89545 0.99175 1.20794 1.06627 0.99539 0.91319 1.17475 1.04771 0.84265 0.87109 1.91443 1.94031 1.57386 1.69874 1.20873 1.02125 0.89560 1.01783 1.21535 0.92788 0.97612 0.90665 1.18559 1.00472 0.84381 0.92806 0.88707 1.20822 1.10564 1.17578 1.05521 0.91909 1.25003 0.95283 0.95562 0.97592 1.69882 1.25680 1.21889 1.34811 0.86538 0.81412 0.78781 0.81132 1.20281 1.21046 1.19592 0.94364 0.90731 0.92842 0.85676 0.85061 0.84359 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 8.29 37.15 0.31 -1.83 15 2 C -0.02 -0.41 3.88 -26.14 -0.10 -0.51 15 3 H 0.10 2.21 8.14 -51.93 -0.42 1.78 15 4 S -0.21 -4.15 22.56 -107.50 -2.43 -6.57 15 5 C -0.10 -1.98 6.48 -39.15 -0.25 -2.24 15 6 C -0.07 -1.18 10.05 -39.45 -0.40 -1.57 15 7 C -0.16 -2.61 10.06 -39.56 -0.40 -3.01 15 8 C 0.09 1.55 7.26 -39.62 -0.29 1.26 15 9 F -0.15 -2.63 17.25 2.25 0.04 -2.59 15 10 C -0.12 -2.50 9.43 -39.20 -0.37 -2.87 15 11 C -0.02 -0.45 5.55 -103.79 -0.58 -1.03 15 12 C 0.06 1.32 2.58 -92.24 -0.24 1.08 15 13 H 0.10 2.46 7.21 -51.93 -0.37 2.09 15 14 C -0.51 -12.39 5.64 -34.44 -0.19 -12.58 15 15 H 0.06 1.56 7.80 -52.48 -0.41 1.15 15 16 C 0.07 1.75 5.45 -17.82 -0.10 1.65 15 17 N -0.89 -23.46 12.75 55.43 0.71 -22.76 15 18 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 15 19 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 22 H 0.04 0.65 8.14 -51.93 -0.42 0.22 15 23 H 0.07 1.49 7.57 -51.93 -0.39 1.10 15 24 H 0.05 1.06 7.95 -51.93 -0.41 0.65 15 25 H 0.13 1.77 8.06 -52.48 -0.42 1.35 15 26 H 0.13 1.70 8.06 -52.48 -0.42 1.28 15 27 H 0.14 2.89 7.84 -52.49 -0.41 2.48 15 28 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 LS Contribution 257.18 15.07 3.88 3.88 Total: -1.00 -25.35 257.18 -8.26 -33.60 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -2.83 Total: 1.37 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -2.60 Total: -21.64 kcal Atomic # 7 Polarization: -23.46 SS G_CDS: 0.71 Total: -22.76 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.43 Total: -6.57 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.35 -8.26 -33.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447220.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.712 kcal (2) G-P(sol) polarization free energy of solvation -25.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds