Wall clock time and date at job start Mon Mar 30 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.96696 * 2 1 4 4 S 1.83295 * 111.09596 * 235.86861 * 2 1 3 5 5 C 1.77438 * 96.61377 * 266.89537 * 4 2 1 6 6 C 1.38797 * 130.53975 * 164.79871 * 5 4 2 7 7 C 1.38038 * 120.19850 * 180.20392 * 6 5 4 8 8 C 1.38495 * 119.27223 * 0.03443 * 7 6 5 9 9 F 1.35098 * 119.75897 * 179.90669 * 8 7 6 10 10 C 1.37880 * 120.48153 * 359.87744 * 8 7 6 11 11 C 1.38861 * 108.28101 * 344.79845 * 5 4 2 12 12 C 1.50879 * 115.37286 * 359.27340 * 11 5 4 13 13 H 1.09002 * 109.27852 * 140.89765 * 12 11 5 14 14 C 1.50702 * 109.28092 * 260.33343 * 12 11 5 15 15 H 1.08003 * 120.00355 * 121.02855 * 14 12 11 16 16 C 1.37879 * 119.99931 * 301.03099 * 14 12 11 17 17 N 1.31515 * 119.99871 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99985 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47483 * 89.99708 * 18 16 14 20 20 H 1.48501 * 109.47214 * 210.00250 * 18 16 14 21 21 H 1.48506 * 109.47043 * 329.99468 * 18 16 14 22 22 H 1.08994 * 109.47357 * 182.67784 * 1 2 3 23 23 H 1.08998 * 109.46865 * 302.67546 * 1 2 3 24 24 H 1.08994 * 109.46919 * 62.67371 * 1 2 3 25 25 H 1.07999 * 119.89551 * 0.21442 * 6 5 4 26 26 H 1.08006 * 120.35973 * 180.02562 * 7 6 5 27 27 H 1.07993 * 119.47661 * 179.97438 * 10 8 7 28 28 H 0.97001 * 119.99788 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9201 1.0178 0.0000 4 16 2.1898 -0.9595 -1.4155 5 6 2.3524 -2.5041 -0.5574 6 6 2.5354 -3.7912 -1.0434 7 6 2.6321 -4.8559 -0.1702 8 6 2.5437 -4.6243 1.1924 9 9 2.6352 -5.6594 2.0558 10 6 2.3637 -3.3451 1.6742 11 6 2.2669 -2.2559 0.8062 12 6 2.0849 -0.8080 1.1896 13 1 1.3886 -0.7419 2.0256 14 6 3.4143 -0.2324 1.6051 15 1 3.8225 0.6181 1.0795 16 6 4.1094 -0.7917 2.6564 17 7 3.6121 -1.8272 3.2967 18 14 5.7575 -0.0787 3.1710 19 1 5.5431 0.9732 4.1970 20 1 6.6080 -1.1564 3.7370 21 1 6.4316 0.5138 1.9878 22 1 -0.3634 -1.0265 0.0480 23 1 -0.3633 0.5548 0.8650 24 1 -0.3633 0.4717 -0.9129 25 1 2.6026 -3.9601 -2.1080 26 1 2.7750 -5.8585 -0.5455 27 1 2.2966 -3.1831 2.7398 28 1 4.1013 -2.2209 4.0360 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260447221.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:59 Heat of formation + Delta-G solvation = -25.134028 kcal Electronic energy + Delta-G solvation = -14807.618668 eV Core-core repulsion = 12249.785715 eV Total energy + Delta-G solvation = -2557.832953 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.04967 -38.39178 -35.04414 -32.39541 -30.00263 -29.49493 -27.28424 -23.79599 -22.15113 -21.76857 -19.86127 -17.07653 -16.63463 -15.90717 -15.45136 -14.82257 -14.69457 -14.28873 -13.56975 -13.18192 -12.70564 -12.56434 -12.35944 -12.01282 -11.96259 -11.52302 -11.09018 -10.94557 -10.73336 -10.65520 -10.15352 -9.95039 -9.50164 -9.19454 -8.75699 -8.54967 -7.83265 -6.53970 -6.17105 -4.35742 1.95064 2.19517 2.47740 3.09418 3.19811 3.27418 3.30905 4.24183 4.47147 5.01506 5.13961 5.47069 5.57083 5.64454 5.76100 5.89858 6.07795 6.27415 6.34061 6.37734 6.57048 6.73974 6.80095 7.05474 7.16790 7.19030 7.54184 7.68093 7.90224 7.95431 8.65629 9.30503 10.75881 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.017429 B = 0.014089 C = 0.009272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.129504 B = 1986.843470 C = 3019.217852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.039 4.039 3 H 0.110 0.890 4 S -0.186 6.186 5 C -0.104 4.104 6 C -0.085 4.085 7 C -0.167 4.167 8 C 0.066 3.934 9 F -0.154 7.154 10 C -0.091 4.091 11 C -0.012 4.012 12 C 0.071 3.929 13 H 0.054 0.946 14 C -0.502 4.502 15 H 0.068 0.932 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.902 3.098 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.171 0.829 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 -0.978 -4.432 6.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 H 0.128 0.872 4 S 0.056 5.944 5 C -0.216 4.216 6 C -0.109 4.109 7 C -0.188 4.188 8 C 0.045 3.955 9 F -0.133 7.133 10 C -0.112 4.112 11 C -0.018 4.018 12 C 0.052 3.948 13 H 0.072 0.928 14 C -0.539 4.539 15 H 0.086 0.914 16 C -0.139 4.139 17 N -0.518 5.518 18 Si 0.729 3.271 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.136 0.864 26 H 0.142 0.858 27 H 0.188 0.812 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.707 -0.643 -5.477 6.645 hybrid contribution 1.007 -0.467 1.631 1.973 sum -2.700 -1.110 -3.845 4.828 Atomic orbital electron populations 1.21954 0.93858 1.02211 1.01406 1.24173 0.96976 1.01363 0.94195 0.87215 1.85279 1.82626 1.05225 1.21265 1.21965 1.07659 0.95518 0.96488 1.19886 1.02616 0.89753 0.98646 1.20708 1.07300 0.99070 0.91687 1.17663 1.06281 0.84741 0.86790 1.91400 1.94267 1.57530 1.70106 1.21715 0.97483 0.88190 1.03855 1.21179 0.94085 0.96298 0.90216 1.18372 0.98061 0.85778 0.92564 0.92839 1.21070 1.03834 1.14254 1.14712 0.91356 1.25001 0.98386 0.94543 0.96020 1.69686 1.38828 1.21688 1.21549 0.86402 0.82986 0.78762 0.78904 1.20369 1.21007 1.19642 0.92455 0.91739 0.92628 0.86386 0.85842 0.81164 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.30 37.16 0.35 -1.83 15 2 C -0.04 -0.76 3.49 -26.13 -0.09 -0.85 15 3 H 0.11 2.08 7.70 -51.93 -0.40 1.68 15 4 S -0.19 -3.74 22.53 -107.50 -2.42 -6.16 15 5 C -0.10 -2.26 6.48 -39.14 -0.25 -2.51 15 6 C -0.09 -1.65 10.05 -39.45 -0.40 -2.05 15 7 C -0.17 -3.19 10.06 -39.56 -0.40 -3.59 15 8 C 0.07 1.43 7.26 -39.62 -0.29 1.14 15 9 F -0.15 -3.23 17.25 2.25 0.04 -3.19 15 10 C -0.09 -2.14 8.29 -39.20 -0.32 -2.46 15 11 C -0.01 -0.29 4.95 -103.79 -0.51 -0.80 15 12 C 0.07 1.65 2.10 -92.24 -0.19 1.46 15 13 H 0.05 1.30 7.92 -51.93 -0.41 0.89 15 14 C -0.50 -12.77 8.45 -34.44 -0.29 -13.06 15 15 H 0.07 1.73 7.53 -52.48 -0.40 1.34 15 16 C 0.06 1.62 5.29 -17.82 -0.09 1.53 15 17 N -0.88 -23.06 9.03 55.43 0.50 -22.56 15 18 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 15 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 22 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 25 H 0.12 1.97 8.06 -52.49 -0.42 1.54 15 26 H 0.12 1.97 8.06 -52.48 -0.42 1.55 15 27 H 0.17 4.26 5.82 -52.49 -0.31 3.95 15 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 LS Contribution 253.22 15.07 3.82 3.82 Total: -1.00 -26.24 253.22 -8.35 -34.58 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -2.76 Total: 1.07 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: -2.50 Total: -23.03 kcal Atomic # 7 Polarization: -23.06 SS G_CDS: 0.50 Total: -22.56 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.42 Total: -6.16 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.24 -8.35 -34.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447221.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.450 kcal (2) G-P(sol) polarization free energy of solvation -26.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds