Wall clock time and date at job start Mon Mar 30 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 110.96696 * 2 1 4 4 S 1.83295 * 111.09596 * 235.86861 * 2 1 3 5 5 C 1.77438 * 96.61377 * 266.89537 * 4 2 1 6 6 C 1.38797 * 130.53975 * 164.79871 * 5 4 2 7 7 C 1.38038 * 120.19850 * 180.20392 * 6 5 4 8 8 C 1.38495 * 119.27223 * 0.03443 * 7 6 5 9 9 F 1.35098 * 119.75897 * 179.90669 * 8 7 6 10 10 C 1.37880 * 120.48153 * 359.87744 * 8 7 6 11 11 C 1.38861 * 108.28101 * 344.79845 * 5 4 2 12 12 C 1.50879 * 115.37286 * 359.27340 * 11 5 4 13 13 H 1.09002 * 109.27852 * 140.89765 * 12 11 5 14 14 C 1.50702 * 109.28092 * 260.33343 * 12 11 5 15 15 H 1.08003 * 120.00355 * 121.02855 * 14 12 11 16 16 C 1.37879 * 119.99931 * 301.03099 * 14 12 11 17 17 N 1.31515 * 119.99871 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99985 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47483 * 89.99708 * 18 16 14 20 20 H 1.48501 * 109.47214 * 210.00250 * 18 16 14 21 21 H 1.48506 * 109.47043 * 329.99468 * 18 16 14 22 22 H 1.08994 * 109.47357 * 182.67784 * 1 2 3 23 23 H 1.08998 * 109.46865 * 302.67546 * 1 2 3 24 24 H 1.08994 * 109.46919 * 62.67371 * 1 2 3 25 25 H 1.07999 * 119.89551 * 0.21442 * 6 5 4 26 26 H 1.08006 * 120.35973 * 180.02562 * 7 6 5 27 27 H 1.07993 * 119.47661 * 179.97438 * 10 8 7 28 28 H 0.97001 * 119.99788 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9201 1.0178 0.0000 4 16 2.1898 -0.9595 -1.4155 5 6 2.3524 -2.5041 -0.5574 6 6 2.5354 -3.7912 -1.0434 7 6 2.6321 -4.8559 -0.1702 8 6 2.5437 -4.6243 1.1924 9 9 2.6352 -5.6594 2.0558 10 6 2.3637 -3.3451 1.6742 11 6 2.2669 -2.2559 0.8062 12 6 2.0849 -0.8080 1.1896 13 1 1.3886 -0.7419 2.0256 14 6 3.4143 -0.2324 1.6051 15 1 3.8225 0.6181 1.0795 16 6 4.1094 -0.7917 2.6564 17 7 3.6121 -1.8272 3.2967 18 14 5.7575 -0.0787 3.1710 19 1 5.5431 0.9732 4.1970 20 1 6.6080 -1.1564 3.7370 21 1 6.4316 0.5138 1.9878 22 1 -0.3634 -1.0265 0.0480 23 1 -0.3633 0.5548 0.8650 24 1 -0.3633 0.4717 -0.9129 25 1 2.6026 -3.9601 -2.1080 26 1 2.7750 -5.8585 -0.5455 27 1 2.2966 -3.1831 2.7398 28 1 4.1013 -2.2209 4.0360 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260447221.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:59 Heat of formation + Delta-G solvation = -36.903361 kcal Electronic energy + Delta-G solvation = -14808.129024 eV Core-core repulsion = 12249.785715 eV Total energy + Delta-G solvation = -2558.343309 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 238.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.71416 -40.05169 -36.70667 -34.22408 -31.59107 -31.13452 -29.03047 -25.54869 -23.80232 -23.35625 -21.53505 -18.84188 -18.35841 -17.56975 -17.13913 -16.63267 -16.39701 -15.83726 -15.21060 -14.78354 -14.41237 -14.09996 -13.98404 -13.71396 -13.51235 -13.16888 -12.85370 -12.64817 -12.43010 -12.20576 -11.84655 -11.71827 -11.26669 -10.84869 -10.63274 -10.22482 -9.54115 -8.19333 -8.03440 -6.35243 0.27899 0.56538 0.89625 1.38003 1.40877 1.47821 1.50136 2.35885 2.79223 3.08498 3.47838 3.91482 4.05700 4.20356 4.24308 4.36718 4.59084 4.70078 4.90853 4.96491 5.11423 5.17911 5.25550 5.34701 5.41657 5.46461 5.74694 5.82140 6.06356 6.17432 6.70480 7.32765 8.79885 Molecular weight = 238.05amu Principal moments of inertia in cm(-1) A = 0.017429 B = 0.014089 C = 0.009272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.129504 B = 1986.843470 C = 3019.217852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.038 4.038 3 H 0.113 0.887 4 S -0.171 6.171 5 C -0.120 4.120 6 C -0.080 4.080 7 C -0.151 4.151 8 C 0.054 3.946 9 F -0.154 7.154 10 C -0.113 4.113 11 C -0.037 4.037 12 C 0.069 3.931 13 H 0.030 0.970 14 C -0.517 4.517 15 H 0.064 0.936 16 C 0.020 3.980 17 N -0.897 5.897 18 Si 0.954 3.046 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.271 1.271 22 H 0.048 0.952 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.154 0.846 26 H 0.163 0.837 27 H 0.147 0.853 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.951 -1.216 -6.125 7.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 H 0.131 0.869 4 S 0.071 5.929 5 C -0.232 4.232 6 C -0.104 4.104 7 C -0.171 4.171 8 C 0.033 3.967 9 F -0.133 7.133 10 C -0.135 4.135 11 C -0.042 4.042 12 C 0.049 3.951 13 H 0.048 0.952 14 C -0.554 4.554 15 H 0.082 0.918 16 C -0.180 4.180 17 N -0.534 5.534 18 Si 0.780 3.220 19 H -0.195 1.195 20 H -0.215 1.215 21 H -0.196 1.196 22 H 0.067 0.933 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.171 0.829 26 H 0.181 0.819 27 H 0.164 0.836 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.661 -0.872 -7.172 8.100 hybrid contribution 0.964 -0.423 2.149 2.393 sum -2.697 -1.295 -5.023 5.847 Atomic orbital electron populations 1.21896 0.91203 1.02210 1.03268 1.24201 0.99158 1.00760 0.92492 0.86884 1.85107 1.82797 1.04350 1.20627 1.22311 1.07663 0.97193 0.96043 1.20346 1.00798 0.88703 1.00513 1.21106 1.04837 1.00949 0.90210 1.17826 1.06782 0.84077 0.88032 1.91394 1.94309 1.57240 1.70383 1.21598 0.99302 0.89624 1.02946 1.21183 0.95607 0.96148 0.91311 1.18336 0.96690 0.86681 0.93359 0.95204 1.21327 1.04892 1.14328 1.14873 0.91790 1.25672 1.01027 0.94974 0.96358 1.69873 1.39498 1.22379 1.21679 0.85601 0.79796 0.78078 0.78546 1.19549 1.21454 1.19611 0.93301 0.90563 0.90082 0.82850 0.81907 0.83590 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.30 71.98 0.67 -3.22 15 2 C -0.04 -1.44 3.49 30.98 0.11 -1.34 15 3 H 0.11 4.19 7.70 -2.39 -0.02 4.17 15 4 S -0.17 -6.57 22.53 -56.49 -1.27 -7.84 15 5 C -0.12 -5.03 6.48 22.55 0.15 -4.88 15 6 C -0.08 -2.86 10.05 22.36 0.22 -2.64 15 7 C -0.15 -5.32 10.06 22.28 0.22 -5.10 15 8 C 0.05 2.28 7.26 22.25 0.16 2.44 15 9 F -0.15 -6.37 17.25 44.97 0.78 -5.60 15 10 C -0.11 -5.42 8.29 22.52 0.19 -5.23 15 11 C -0.04 -1.74 4.95 -19.33 -0.10 -1.84 15 12 C 0.07 3.22 2.10 -11.84 -0.02 3.20 15 13 H 0.03 1.51 7.92 -2.39 -0.02 1.49 15 14 C -0.52 -26.65 8.45 25.60 0.22 -26.43 15 15 H 0.06 3.26 7.53 -2.91 -0.02 3.24 15 16 C 0.02 1.04 5.29 84.66 0.45 1.48 15 17 N -0.90 -48.32 9.03 21.45 0.19 -48.13 15 18 Si 0.95 42.37 29.54 68.60 2.03 44.39 15 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 20 H -0.29 -12.91 7.11 99.48 0.71 -12.20 15 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 22 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 25 H 0.15 4.39 8.06 -2.91 -0.02 4.37 15 26 H 0.16 4.44 8.06 -2.91 -0.02 4.41 15 27 H 0.15 7.65 5.82 -2.91 -0.02 7.63 15 28 H 0.26 13.75 8.31 -92.71 -0.77 12.98 15 Total: -1.00 -56.12 253.22 5.16 -50.96 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.17 Total: 9.76 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 2.27 Total: -43.55 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.19 Total: -48.13 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.78 Total: -5.60 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -6.57 SS G_CDS: -1.27 Total: -7.84 kcal Total: -56.12 5.16 -50.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447221.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.057 kcal (2) G-P(sol) polarization free energy of solvation -56.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds