Wall clock time and date at job start Mon Mar 30 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00245 * 2 1 4 4 H 1.48498 * 109.47262 * 239.99980 * 3 2 1 5 5 H 1.48509 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47184 * 120.00001 * 3 2 1 7 7 C 1.37878 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99933 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46970 * 180.02562 * 9 7 2 11 11 C 1.38271 * 119.95797 * 264.98565 * 10 9 7 12 12 C 1.38165 * 120.12658 * 180.02562 * 11 10 9 13 13 C 1.38773 * 120.10978 * 0.02807 * 12 11 10 14 14 C 1.38871 * 119.83902 * 359.85621 * 13 12 11 15 15 C 1.38369 * 119.95873 * 85.00037 * 10 9 7 16 16 F 1.35103 * 119.98165 * 0.28604 * 15 10 9 17 17 O 1.36160 * 120.79464 * 180.43281 * 14 13 12 18 18 C 1.43174 * 116.71116 * 342.67687 * 17 14 13 19 19 C 1.53472 * 108.25454 * 46.15452 * 18 17 14 20 20 O 1.36112 * 119.38002 * 179.69187 * 13 12 11 21 21 H 0.97005 * 119.99628 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46841 * 60.00142 * 9 7 2 23 23 H 1.08996 * 109.47096 * 300.00074 * 9 7 2 24 24 H 1.07994 * 119.93620 * 0.04561 * 11 10 9 25 25 H 1.08003 * 119.94692 * 179.97438 * 12 11 10 26 26 H 1.08998 * 109.70641 * 286.46745 * 18 17 14 27 27 H 1.09002 * 109.71017 * 165.84619 * 18 17 14 28 28 H 1.08997 * 109.70919 * 180.63119 * 19 18 17 29 29 H 1.08999 * 109.70609 * 60.00417 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.5993 -4.2375 -1.1939 12 6 3.4965 -5.2882 -1.1979 13 6 4.0299 -5.7527 -0.0040 14 6 3.6621 -5.1568 1.1953 15 6 2.7586 -4.1019 1.1937 16 9 2.3919 -3.5251 2.3591 17 8 4.1802 -5.5912 2.3772 18 6 4.7911 -6.8860 2.3749 19 6 5.7073 -6.9832 1.1475 20 8 4.9077 -6.7928 -0.0246 21 1 -0.4850 0.8401 -0.0004 22 1 0.6240 -2.5566 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.1858 -3.8783 -2.1247 25 1 3.7824 -5.7494 -2.1317 26 1 4.0211 -7.6556 2.3206 27 1 5.3788 -7.0168 3.2836 28 1 6.1771 -7.9662 1.1164 29 1 6.4741 -6.2102 1.1991 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260455556.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:18 Heat of formation + Delta-G solvation = -99.764490 kcal Electronic energy + Delta-G solvation = -16685.007754 eV Core-core repulsion = 13681.185711 eV Total energy + Delta-G solvation = -3003.822043 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.02691 -40.91061 -37.48693 -36.98838 -33.32836 -31.39485 -30.12356 -28.94095 -26.71980 -24.59953 -22.99161 -21.84136 -20.26323 -18.38631 -17.37437 -17.18565 -16.36892 -15.65728 -15.06559 -14.99014 -14.64664 -14.55401 -14.26994 -14.14434 -13.64824 -12.72925 -12.51687 -12.30240 -11.88874 -11.50372 -11.12959 -11.00595 -10.69099 -10.55889 -10.52449 -10.43405 -9.66754 -9.40066 -8.41575 -7.90292 -7.59152 -6.03572 -4.07670 1.60929 1.70249 3.16114 3.32141 3.34255 3.37808 3.41564 4.05340 4.26713 4.46706 4.65581 4.78650 4.86410 5.16662 5.26445 5.31476 5.41288 5.53090 5.62593 6.02025 6.22553 6.32832 6.66079 6.86274 7.06507 7.12234 7.48260 7.65961 7.68011 7.90682 8.27815 8.95419 9.55857 11.06334 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.038839 B = 0.006638 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.750120 B = 4217.279582 C = 4406.103620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.057 0.943 9 C 0.053 3.947 10 C -0.064 4.064 11 C -0.092 4.092 12 C -0.124 4.124 13 C 0.045 3.955 14 C 0.008 3.992 15 C 0.105 3.895 16 F -0.123 7.123 17 O -0.303 6.303 18 C 0.021 3.979 19 C 0.021 3.979 20 O -0.308 6.308 21 H 0.263 0.737 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.140 0.860 25 H 0.132 0.868 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.960 -13.579 0.970 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.016 3.984 10 C -0.065 4.065 11 C -0.110 4.110 12 C -0.143 4.143 13 C 0.000 4.000 14 C -0.037 4.037 15 C 0.085 3.915 16 F -0.102 7.102 17 O -0.217 6.217 18 C -0.055 4.055 19 C -0.055 4.055 20 O -0.223 6.223 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.158 0.842 25 H 0.150 0.850 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.820 -13.471 1.056 16.136 hybrid contribution 0.619 0.850 0.410 1.129 sum 9.439 -12.621 1.466 15.828 Atomic orbital electron populations 1.69942 1.06024 1.27012 1.50201 1.24977 0.94895 0.99231 0.95007 0.86571 0.79542 0.82676 0.78768 1.20106 1.21183 1.20121 1.20962 0.92972 0.89703 1.51495 0.92516 1.18300 0.92211 0.88793 0.99113 1.20676 0.98514 0.97414 0.89915 1.20784 0.97355 0.94718 0.98184 1.20406 1.00183 0.98360 0.95363 1.18437 0.96012 0.92854 0.92681 1.18807 1.00262 0.99661 0.84974 1.16806 0.97288 0.94469 0.82946 1.91485 1.89877 1.83215 1.45594 1.86364 1.72809 1.33657 1.28914 1.23574 0.97073 0.84715 1.00137 1.23559 0.93040 1.04041 0.84840 1.86273 1.50546 1.46612 1.38858 0.92717 0.94461 0.94674 0.84240 0.84969 0.90768 0.86425 0.86469 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.51 -14.57 9.09 -34.44 -0.31 -14.88 15 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 15 9 C 0.05 1.37 4.87 -29.04 -0.14 1.23 15 10 C -0.06 -1.42 5.07 -104.56 -0.53 -1.96 15 11 C -0.09 -1.72 9.67 -39.60 -0.38 -2.10 15 12 C -0.12 -2.06 9.96 -39.41 -0.39 -2.46 15 13 C 0.04 0.77 6.49 -39.15 -0.25 0.52 15 14 C 0.01 0.16 6.50 -39.10 -0.25 -0.09 15 15 C 0.10 2.32 7.25 -39.29 -0.28 2.03 15 16 F -0.12 -2.95 16.37 2.25 0.04 -2.91 15 17 O -0.30 -5.26 10.26 -33.07 -0.34 -5.60 15 18 C 0.02 0.24 7.26 37.40 0.27 0.51 15 19 C 0.02 0.23 7.26 37.40 0.27 0.50 15 20 O -0.31 -4.55 10.42 -32.92 -0.34 -4.90 15 21 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.04 0.98 8.05 -51.93 -0.42 0.56 15 23 H 0.04 0.98 7.78 -51.93 -0.40 0.58 15 24 H 0.14 2.35 8.06 -52.49 -0.42 1.93 15 25 H 0.13 1.80 8.06 -52.48 -0.42 1.38 15 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 27 H 0.12 0.94 8.14 -51.93 -0.42 0.52 15 28 H 0.12 0.81 8.14 -51.93 -0.42 0.39 15 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 LS Contribution 260.65 15.07 3.93 3.93 Total: -1.00 -32.04 260.65 -6.01 -38.05 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: -2.90 Total: -4.50 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.11 Total: -15.07 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.74 Total: -25.77 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.68 Total: -10.49 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.04 -6.01 -38.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260455556.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.719 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds