Wall clock time and date at job start Mon Mar 30 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00130 * 2 1 4 4 H 1.48497 * 109.47137 * 270.00152 * 3 2 1 5 5 H 1.48502 * 109.47014 * 30.00095 * 3 2 1 6 6 H 1.48496 * 109.47173 * 149.99883 * 3 2 1 7 7 C 1.37868 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00506 * 171.15915 * 7 2 1 9 9 C 1.50706 * 119.99904 * 351.16310 * 7 2 1 10 10 C 1.50704 * 115.54480 * 324.68132 * 9 7 2 11 11 C 1.38463 * 120.01221 * 101.58711 * 10 9 7 12 12 F 1.35104 * 119.95295 * 359.97438 * 11 10 9 13 13 C 1.38405 * 120.09663 * 179.97438 * 11 10 9 14 14 C 1.38298 * 120.12067 * 0.02562 * 13 11 10 15 15 C 1.38497 * 120.02070 * 359.69626 * 14 13 11 16 16 O 1.36038 * 120.04931 * 180.29727 * 15 14 13 17 17 C 1.38524 * 120.01124 * 281.56049 * 10 9 7 18 18 O 1.35994 * 120.05982 * 0.02562 * 17 10 9 19 19 C 1.52997 * 117.52136 * 110.38281 * 9 7 2 20 20 C 1.52994 * 60.00095 * 107.48172 * 19 9 7 21 21 H 0.97005 * 119.99822 * 5.00890 * 1 2 3 22 22 H 1.08003 * 119.94173 * 180.02562 * 13 11 10 23 23 H 1.08001 * 119.98910 * 179.97438 * 14 13 11 24 24 H 0.96698 * 113.99993 * 270.25931 * 16 15 14 25 25 H 0.96700 * 114.00206 * 85.16907 * 18 17 10 26 26 H 1.09001 * 117.49642 * 214.97117 * 19 9 7 27 27 H 1.09000 * 117.49794 * 359.97438 * 19 9 7 28 28 H 1.09005 * 117.49912 * 252.50969 * 20 19 9 29 29 H 1.09003 * 117.49937 * 107.48628 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0749 -1.1995 -0.1443 9 6 1.2644 -2.4915 0.1994 10 6 0.0947 -2.4330 1.1478 11 6 -1.1966 -2.3720 0.6520 12 9 -1.4071 -2.3646 -0.6826 13 6 -2.2722 -2.3188 1.5214 14 6 -2.0607 -2.3257 2.8882 15 6 -0.7714 -2.3923 3.3895 16 8 -0.5631 -2.4053 4.7338 17 6 0.3111 -2.4407 2.5161 18 8 1.5787 -2.5005 3.0049 19 6 1.1549 -3.4349 -1.0001 20 6 2.0825 -3.7839 0.1655 21 1 -0.4850 0.8369 -0.0733 22 1 -3.2784 -2.2717 1.1319 23 1 -2.9015 -2.2837 3.5647 24 1 -0.4618 -1.5266 5.1246 25 1 2.0142 -1.6400 3.0752 26 1 0.2367 -4.0134 -1.1032 27 1 1.6178 -3.1171 -1.9343 28 1 3.1560 -3.6958 -0.0019 29 1 1.7747 -4.5919 0.8292 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260461683.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:10 Heat of formation + Delta-G solvation = -77.558491 kcal Electronic energy + Delta-G solvation = -17504.209769 eV Core-core repulsion = 14501.350650 eV Total energy + Delta-G solvation = -3002.859119 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.64377 -39.38681 -36.88888 -35.72347 -35.07193 -32.24440 -29.22461 -27.99053 -25.74052 -22.68460 -21.90206 -20.92263 -19.58397 -17.99330 -17.38064 -16.35125 -15.97749 -15.55642 -14.81414 -14.57173 -14.33457 -13.82534 -13.52593 -13.18568 -12.88999 -12.46291 -11.93115 -11.40982 -11.10939 -10.99169 -10.81227 -10.62679 -10.55043 -10.30796 -9.97477 -9.38282 -9.28319 -8.84724 -8.33409 -7.76452 -7.51458 -6.10992 -4.21607 1.90670 2.03166 3.17803 3.26471 3.28836 4.17430 4.26382 4.74309 4.89205 4.97454 5.35547 5.42166 5.67830 5.76633 5.98571 6.29369 6.36376 6.53593 6.61413 6.72099 6.77145 6.85243 6.98175 7.17654 7.24770 7.35507 7.59667 7.76117 8.02226 8.23684 8.54402 8.74788 9.36615 10.85509 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.012358 C = 0.011371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.338341 B = 2265.238105 C = 2461.902132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.070 3.930 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.066 0.934 9 C 0.082 3.918 10 C -0.023 4.023 11 C 0.171 3.829 12 F -0.126 7.126 13 C -0.173 4.173 14 C -0.126 4.126 15 C 0.043 3.957 16 O -0.492 6.492 17 C 0.110 3.890 18 O -0.481 6.481 19 C -0.198 4.198 20 C -0.190 4.190 21 H 0.264 0.736 22 H 0.125 0.875 23 H 0.125 0.875 24 H 0.375 0.625 25 H 0.385 0.615 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 -1.299 4.587 5.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.527 4.527 8 H 0.084 0.916 9 C 0.082 3.918 10 C -0.025 4.025 11 C 0.151 3.849 12 F -0.105 7.105 13 C -0.192 4.192 14 C -0.145 4.145 15 C -0.002 4.002 16 O -0.300 6.300 17 C 0.064 3.936 18 O -0.290 6.290 19 C -0.236 4.236 20 C -0.227 4.227 21 H 0.075 0.925 22 H 0.143 0.857 23 H 0.142 0.858 24 H 0.229 0.771 25 H 0.241 0.759 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.889 -2.376 4.556 5.895 hybrid contribution 0.448 2.120 -0.307 2.188 sum -2.441 -0.256 4.249 4.907 Atomic orbital electron populations 1.69925 1.05849 1.27084 1.47742 1.25027 0.94882 0.99183 0.94341 0.86556 0.79872 0.83053 0.78468 1.20491 1.21112 1.19632 1.20462 0.93543 0.88208 1.50464 0.91559 1.17446 0.91825 0.90125 0.92440 1.19563 0.93637 0.96381 0.92917 1.17014 0.92383 0.97975 0.77496 1.91442 1.95363 1.93083 1.30580 1.20774 0.98214 1.07337 0.92874 1.20720 0.95716 1.03425 0.94612 1.18554 0.91788 1.07029 0.82802 1.84888 1.94472 1.32757 1.17926 1.18204 0.84270 1.01519 0.89605 1.84739 1.24587 1.34297 1.85417 1.23077 0.99820 1.06411 0.94326 1.22859 0.96949 1.00630 1.02255 0.92545 0.85738 0.85754 0.77115 0.75931 0.91450 0.90072 0.90267 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.01 10.11 55.43 0.56 -22.45 15 2 C 0.07 1.80 5.27 -17.82 -0.09 1.71 15 3 Si 0.89 19.88 29.55 -169.99 -5.02 14.86 15 4 H -0.28 -6.30 7.11 56.52 0.40 -5.89 15 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.49 -12.69 9.05 -34.44 -0.31 -13.00 15 8 H 0.07 1.71 7.83 -52.48 -0.41 1.30 15 9 C 0.08 2.01 1.31 -156.81 -0.21 1.80 15 10 C -0.02 -0.55 3.68 -104.43 -0.38 -0.93 15 11 C 0.17 3.92 5.46 -39.44 -0.22 3.70 15 12 F -0.13 -3.05 14.82 2.25 0.03 -3.02 15 13 C -0.17 -3.37 10.02 -39.50 -0.40 -3.77 15 14 C -0.13 -2.29 9.98 -39.46 -0.39 -2.68 15 15 C 0.04 0.84 6.72 -39.14 -0.26 0.58 15 16 O -0.49 -8.39 13.29 -34.38 -0.46 -8.85 15 17 C 0.11 2.39 6.68 -39.13 -0.26 2.13 15 18 O -0.48 -9.94 12.57 -34.24 -0.43 -10.37 15 19 C -0.20 -4.60 8.91 -26.74 -0.24 -4.84 15 20 C -0.19 -4.22 9.76 -26.74 -0.26 -4.49 15 21 H 0.26 6.79 8.32 -40.82 -0.34 6.45 15 22 H 0.12 2.09 8.06 -52.48 -0.42 1.67 15 23 H 0.12 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.38 4.59 9.06 45.56 0.41 5.00 15 25 H 0.39 6.87 9.06 45.56 0.41 7.28 15 26 H 0.07 1.52 7.29 -51.93 -0.38 1.14 15 27 H 0.08 1.87 8.14 -51.93 -0.42 1.45 15 28 H 0.08 1.69 8.14 -51.93 -0.42 1.27 15 29 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 LS Contribution 260.60 15.07 3.93 3.93 Total: -1.00 -29.34 260.60 -5.63 -34.97 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -1.21 Total: 10.71 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -3.02 Total: -19.78 kcal Atomic # 7 Polarization: -23.01 SS G_CDS: 0.56 Total: -22.45 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.89 Total: -19.22 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.03 Total: -3.02 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.34 -5.63 -34.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461683.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.589 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds