Wall clock time and date at job start Mon Mar 30 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00130 * 2 1 4 4 H 1.48497 * 109.47137 * 270.00152 * 3 2 1 5 5 H 1.48502 * 109.47014 * 30.00095 * 3 2 1 6 6 H 1.48496 * 109.47173 * 149.99883 * 3 2 1 7 7 C 1.37868 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00506 * 171.15915 * 7 2 1 9 9 C 1.50706 * 119.99904 * 351.16310 * 7 2 1 10 10 C 1.50704 * 115.54480 * 324.68132 * 9 7 2 11 11 C 1.38463 * 120.01221 * 101.58711 * 10 9 7 12 12 F 1.35104 * 119.95295 * 359.97438 * 11 10 9 13 13 C 1.38405 * 120.09663 * 179.97438 * 11 10 9 14 14 C 1.38298 * 120.12067 * 0.02562 * 13 11 10 15 15 C 1.38497 * 120.02070 * 359.69626 * 14 13 11 16 16 O 1.36038 * 120.04931 * 180.29727 * 15 14 13 17 17 C 1.38524 * 120.01124 * 281.56049 * 10 9 7 18 18 O 1.35994 * 120.05982 * 0.02562 * 17 10 9 19 19 C 1.52997 * 117.52136 * 110.38281 * 9 7 2 20 20 C 1.52994 * 60.00095 * 107.48172 * 19 9 7 21 21 H 0.97005 * 119.99822 * 5.00890 * 1 2 3 22 22 H 1.08003 * 119.94173 * 180.02562 * 13 11 10 23 23 H 1.08001 * 119.98910 * 179.97438 * 14 13 11 24 24 H 0.96698 * 113.99993 * 270.25931 * 16 15 14 25 25 H 0.96700 * 114.00206 * 85.16907 * 18 17 10 26 26 H 1.09001 * 117.49642 * 214.97117 * 19 9 7 27 27 H 1.09000 * 117.49794 * 359.97438 * 19 9 7 28 28 H 1.09005 * 117.49912 * 252.50969 * 20 19 9 29 29 H 1.09003 * 117.49937 * 107.48628 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0749 -1.1995 -0.1443 9 6 1.2644 -2.4915 0.1994 10 6 0.0947 -2.4330 1.1478 11 6 -1.1966 -2.3720 0.6520 12 9 -1.4071 -2.3646 -0.6826 13 6 -2.2722 -2.3188 1.5214 14 6 -2.0607 -2.3257 2.8882 15 6 -0.7714 -2.3923 3.3895 16 8 -0.5631 -2.4053 4.7338 17 6 0.3111 -2.4407 2.5161 18 8 1.5787 -2.5005 3.0049 19 6 1.1549 -3.4349 -1.0001 20 6 2.0825 -3.7839 0.1655 21 1 -0.4850 0.8369 -0.0733 22 1 -3.2784 -2.2717 1.1319 23 1 -2.9015 -2.2837 3.5647 24 1 -0.4618 -1.5266 5.1246 25 1 2.0142 -1.6400 3.0752 26 1 0.2367 -4.0134 -1.1032 27 1 1.6178 -3.1171 -1.9343 28 1 3.1560 -3.6958 -0.0019 29 1 1.7747 -4.5919 0.8292 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461683.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:10 Heat of formation + Delta-G solvation = -97.326928 kcal Electronic energy + Delta-G solvation = -17505.066993 eV Core-core repulsion = 14501.350650 eV Total energy + Delta-G solvation = -3003.716343 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.37665 -40.93583 -38.49492 -37.32323 -36.61412 -34.18196 -30.81446 -29.52390 -27.68155 -24.30063 -23.55085 -22.65871 -21.31769 -19.60602 -18.94688 -18.08731 -17.59380 -17.16006 -16.64548 -16.14866 -16.05750 -15.54117 -15.13433 -14.86904 -14.54553 -13.93287 -13.71262 -13.12447 -12.88624 -12.71681 -12.45910 -12.30646 -12.20396 -12.08374 -11.67342 -11.22117 -10.96128 -10.63097 -10.20473 -9.38172 -9.11271 -8.00464 -6.19968 0.34539 0.49007 1.41134 1.45304 1.53827 2.40597 2.64293 2.97782 3.34997 3.44098 3.60810 3.83578 4.02507 4.23366 4.45747 4.53379 4.68709 4.88260 4.91220 5.03611 5.14913 5.28956 5.33669 5.47206 5.51285 5.66557 5.72169 6.07438 6.32677 6.72969 6.77765 7.09447 7.40105 8.91285 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.012358 C = 0.011371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.338341 B = 2265.238105 C = 2461.902132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.034 3.966 3 Si 0.953 3.047 4 H -0.284 1.284 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.057 0.943 9 C 0.063 3.937 10 C -0.047 4.047 11 C 0.138 3.862 12 F -0.144 7.144 13 C -0.167 4.167 14 C -0.116 4.116 15 C 0.051 3.949 16 O -0.494 6.494 17 C 0.090 3.910 18 O -0.488 6.488 19 C -0.202 4.202 20 C -0.175 4.175 21 H 0.261 0.739 22 H 0.151 0.849 23 H 0.165 0.835 24 H 0.400 0.600 25 H 0.394 0.606 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 -0.848 6.061 6.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.169 4.169 3 Si 0.778 3.222 4 H -0.210 1.210 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.063 3.937 10 C -0.049 4.049 11 C 0.118 3.882 12 F -0.123 7.123 13 C -0.186 4.186 14 C -0.134 4.134 15 C 0.005 3.995 16 O -0.305 6.305 17 C 0.045 3.955 18 O -0.298 6.298 19 C -0.240 4.240 20 C -0.212 4.212 21 H 0.071 0.929 22 H 0.169 0.831 23 H 0.182 0.818 24 H 0.257 0.743 25 H 0.250 0.750 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.527 -1.921 6.047 7.259 hybrid contribution 0.641 1.956 -0.695 2.172 sum -2.886 0.035 5.352 6.080 Atomic orbital electron populations 1.70077 1.06750 1.27304 1.48015 1.25618 0.95586 1.01667 0.94015 0.85638 0.78967 0.79548 0.77997 1.20996 1.20849 1.18960 1.20629 0.93322 0.89495 1.51102 0.92433 1.17566 0.92900 0.90066 0.93214 1.19606 0.93567 0.98134 0.93568 1.17393 0.93365 1.00130 0.77309 1.91384 1.95460 1.93533 1.31879 1.21110 0.98573 1.05735 0.93151 1.21120 0.96379 1.01384 0.94531 1.18624 0.91662 1.05634 0.83536 1.84823 1.94367 1.34879 1.16450 1.18440 0.85132 1.02424 0.89550 1.84701 1.24693 1.35189 1.85224 1.23017 1.00182 1.06624 0.94138 1.22820 0.96982 0.99962 1.01440 0.92914 0.83090 0.81794 0.74311 0.74979 0.91321 0.90747 0.89700 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.80 10.11 21.44 0.22 -46.58 15 2 C 0.03 1.73 5.27 84.65 0.45 2.17 15 3 Si 0.95 40.71 29.55 68.60 2.03 42.74 15 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 6 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 7 C -0.51 -26.55 9.05 25.60 0.23 -26.32 15 8 H 0.06 3.01 7.83 -2.91 -0.02 2.98 15 9 C 0.06 3.11 1.31 -53.67 -0.07 3.03 15 10 C -0.05 -2.20 3.68 -19.74 -0.07 -2.28 15 11 C 0.14 6.24 5.46 22.36 0.12 6.36 15 12 F -0.14 -7.04 14.82 44.97 0.67 -6.37 15 13 C -0.17 -6.14 10.02 22.32 0.22 -5.92 15 14 C -0.12 -3.81 9.98 22.35 0.22 -3.59 15 15 C 0.05 1.85 6.72 22.56 0.15 2.00 15 16 O -0.49 -15.18 13.29 -80.10 -1.06 -16.24 15 17 C 0.09 3.84 6.68 22.56 0.15 3.99 15 18 O -0.49 -19.74 12.57 -79.60 -1.00 -20.74 15 19 C -0.20 -9.50 8.91 30.59 0.27 -9.23 15 20 C -0.17 -7.80 9.76 30.59 0.30 -7.50 15 21 H 0.26 13.38 8.32 -92.70 -0.77 12.61 15 22 H 0.15 4.63 8.06 -2.91 -0.02 4.61 15 23 H 0.16 4.06 8.06 -2.91 -0.02 4.04 15 24 H 0.40 8.31 9.06 -74.06 -0.67 7.64 15 25 H 0.39 13.84 9.06 -74.06 -0.67 13.16 15 26 H 0.07 3.16 7.29 -2.39 -0.02 3.14 15 27 H 0.07 3.52 8.14 -2.39 -0.02 3.50 15 28 H 0.08 3.62 8.14 -2.38 -0.02 3.60 15 29 H 0.08 3.25 8.14 -2.39 -0.02 3.23 15 Total: -1.00 -61.62 260.60 2.68 -58.93 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -0.14 Total: 25.53 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 1.98 Total: -37.27 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.22 Total: -46.58 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -2.06 Total: -36.98 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 0.67 Total: -6.37 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -61.62 2.68 -58.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461683.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.393 kcal (2) G-P(sol) polarization free energy of solvation -61.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds