Wall clock time and date at job start Mon Mar 30 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99839 * 2 1 4 4 H 1.48503 * 109.47347 * 270.00013 * 3 2 1 5 5 H 1.48497 * 109.47246 * 30.00226 * 3 2 1 6 6 H 1.48504 * 109.46944 * 150.00366 * 3 2 1 7 7 C 1.37882 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99779 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99716 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46696 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47058 * 180.02562 * 10 9 7 12 12 C 1.38249 * 119.92409 * 90.00126 * 11 10 9 13 13 C 1.38570 * 120.07382 * 179.97438 * 12 11 10 14 14 C 1.39204 * 119.84365 * 359.97438 * 13 12 11 15 15 C 1.38698 * 119.82441 * 0.02562 * 14 13 12 16 16 F 1.35100 * 120.00500 * 180.02562 * 15 14 13 17 17 C 1.38228 * 119.91996 * 269.98364 * 11 10 9 18 18 O 1.36564 * 108.64468 * 179.97438 * 14 13 12 19 19 C 1.43988 * 105.46979 * 17.27322 * 18 14 13 20 20 O 1.36505 * 131.50942 * 179.97438 * 13 12 11 21 21 H 0.97003 * 120.00519 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.46914 * 60.00570 * 9 7 2 23 23 H 1.08988 * 109.47786 * 299.99915 * 9 7 2 24 24 H 1.08998 * 109.46961 * 60.00884 * 10 9 7 25 25 H 1.08999 * 109.47607 * 300.00300 * 10 9 7 26 26 H 1.08004 * 119.96188 * 359.96089 * 12 11 10 27 27 H 1.08003 * 119.94274 * 0.03743 * 17 11 10 28 28 H 1.09004 * 110.57019 * 214.33308 * 19 18 14 29 29 H 1.09002 * 110.57590 * 91.45191 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5285 -2.6365 -0.0009 12 6 6.2181 -2.6365 1.1973 13 6 7.6038 -2.6370 1.2009 14 6 8.2997 -2.6382 -0.0047 15 6 7.6025 -2.6382 -1.2036 16 9 8.2742 -2.6398 -2.3758 17 6 6.2180 -2.6370 -1.1990 18 8 9.6387 -2.6379 0.2641 19 6 9.7544 -3.0487 1.6393 20 8 8.5058 -2.6366 2.2255 21 1 -0.4851 0.8400 0.0004 22 1 3.8751 -0.6804 0.8889 23 1 3.8745 -0.6800 -0.8910 24 1 3.6579 -3.1505 -0.8908 25 1 3.6585 -3.1503 0.8892 26 1 5.6762 -2.6358 2.1315 27 1 5.6758 -2.6367 -2.1330 28 1 10.5901 -2.5414 2.1215 29 1 9.8705 -4.1303 1.7076 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260464644.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:31 Heat of formation + Delta-G solvation = -91.445843 kcal Electronic energy + Delta-G solvation = -16226.511399 eV Core-core repulsion = 13223.050080 eV Total energy + Delta-G solvation = -3003.461320 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.87067 -42.18498 -38.20461 -36.32921 -33.88662 -31.94428 -30.17041 -29.19051 -26.22913 -25.11834 -23.01203 -22.28369 -20.46111 -18.22795 -17.83343 -17.73545 -16.84958 -16.51275 -15.73024 -15.42174 -15.15103 -14.32526 -14.25221 -13.71169 -13.44597 -13.08203 -12.84460 -12.66632 -12.55710 -11.96706 -11.70464 -11.62382 -11.00027 -10.80750 -10.12154 -9.91552 -9.78503 -9.26759 -8.61859 -8.56741 -8.04878 -6.08847 -4.08063 1.06041 1.07861 2.60293 3.28039 3.29461 3.37379 3.41428 3.46725 4.05486 4.42071 4.50163 4.64612 4.71107 5.01504 5.13839 5.17015 5.25570 5.33658 5.84105 5.91394 6.08508 6.14794 6.29639 6.35219 6.61602 6.70804 7.05452 7.18696 7.32115 7.71702 8.46551 8.95115 9.53153 11.04226 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.005853 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.115733 B = 4782.665517 C = 4979.493941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.069 4.069 11 C -0.019 4.019 12 C -0.110 4.110 13 C 0.063 3.937 14 C -0.030 4.030 15 C 0.125 3.875 16 F -0.133 7.133 17 C -0.147 4.147 18 O -0.305 6.305 19 C 0.213 3.787 20 O -0.305 6.305 21 H 0.264 0.736 22 H 0.020 0.980 23 H 0.015 0.985 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.144 0.856 27 H 0.152 0.848 28 H 0.131 0.869 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.487 -6.633 1.719 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.092 0.908 9 C -0.045 4.045 10 C -0.106 4.106 11 C -0.020 4.020 12 C -0.129 4.129 13 C 0.019 3.981 14 C -0.074 4.074 15 C 0.105 3.895 16 F -0.112 7.112 17 C -0.166 4.166 18 O -0.222 6.222 19 C 0.101 3.899 20 O -0.221 6.221 21 H 0.074 0.926 22 H 0.038 0.962 23 H 0.034 0.966 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.162 0.838 27 H 0.170 0.830 28 H 0.148 0.852 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.538 -6.410 1.781 18.757 hybrid contribution 0.806 0.931 -0.099 1.236 sum 18.344 -5.479 1.682 19.218 Atomic orbital electron populations 1.69903 1.06297 1.26999 1.50805 1.25000 0.94708 0.99150 0.94418 0.86820 0.80438 0.83678 0.78659 1.20192 1.21323 1.18908 1.21093 0.89134 0.94625 1.51328 0.90766 1.19594 0.97197 0.90848 0.96901 1.20708 0.85685 1.01070 1.03149 1.20049 0.98209 0.93448 0.90266 1.20155 0.88414 1.04202 1.00095 1.19534 0.91833 1.02451 0.84306 1.19566 0.83164 1.10438 0.94275 1.16603 0.89206 1.05875 0.77825 1.91498 1.80391 1.94070 1.45228 1.20961 0.90020 1.04954 1.00649 1.87385 1.20107 1.85375 1.29305 1.25604 0.87642 1.00073 0.76563 1.87371 1.18643 1.84764 1.31360 0.92641 0.96204 0.96629 0.90656 0.90686 0.83811 0.82986 0.85191 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.96 55.43 0.77 -26.50 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 15 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 15 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 15 7 C -0.52 -14.33 9.66 -34.44 -0.33 -14.67 15 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 15 9 C -0.01 -0.18 4.02 -27.88 -0.11 -0.29 15 10 C -0.07 -1.23 5.28 -27.88 -0.15 -1.38 15 11 C -0.02 -0.31 5.13 -104.62 -0.54 -0.84 15 12 C -0.11 -1.66 9.71 -39.45 -0.38 -2.05 15 13 C 0.06 0.95 7.15 -39.10 -0.28 0.67 15 14 C -0.03 -0.46 7.13 -39.05 -0.28 -0.73 15 15 C 0.12 1.93 7.31 -39.33 -0.29 1.64 15 16 F -0.13 -2.07 17.27 2.25 0.04 -2.03 15 17 C -0.15 -2.21 9.67 -39.51 -0.38 -2.59 15 18 O -0.31 -4.29 11.41 -45.90 -0.52 -4.81 15 19 C 0.21 2.16 8.89 101.05 0.90 3.06 15 20 O -0.31 -4.12 11.40 -45.71 -0.52 -4.64 15 21 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 22 H 0.02 0.45 7.20 -51.93 -0.37 0.08 15 23 H 0.02 0.35 7.57 -51.94 -0.39 -0.04 15 24 H 0.07 1.29 8.08 -51.93 -0.42 0.87 15 25 H 0.07 1.29 8.08 -51.93 -0.42 0.87 15 26 H 0.14 1.99 8.06 -52.48 -0.42 1.57 15 27 H 0.15 2.05 8.06 -52.48 -0.42 1.63 15 28 H 0.13 0.87 8.14 -51.93 -0.42 0.45 15 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 15 LS Contribution 261.31 15.07 3.94 3.94 Total: -1.00 -31.02 261.31 -5.79 -36.80 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: -2.88 Total: -4.17 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.94 Total: -15.33 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -1.04 Total: -9.46 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.02 -5.79 -36.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260464644.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.644 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds