Wall clock time and date at job start Mon Mar 30 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99839 * 2 1 4 4 H 1.48503 * 109.47347 * 270.00013 * 3 2 1 5 5 H 1.48497 * 109.47246 * 30.00226 * 3 2 1 6 6 H 1.48504 * 109.46944 * 150.00366 * 3 2 1 7 7 C 1.37882 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99779 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99716 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46696 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47058 * 180.02562 * 10 9 7 12 12 C 1.38249 * 119.92409 * 90.00126 * 11 10 9 13 13 C 1.38570 * 120.07382 * 179.97438 * 12 11 10 14 14 C 1.39204 * 119.84365 * 359.97438 * 13 12 11 15 15 C 1.38698 * 119.82441 * 0.02562 * 14 13 12 16 16 F 1.35100 * 120.00500 * 180.02562 * 15 14 13 17 17 C 1.38228 * 119.91996 * 269.98364 * 11 10 9 18 18 O 1.36564 * 108.64468 * 179.97438 * 14 13 12 19 19 C 1.43988 * 105.46979 * 17.27322 * 18 14 13 20 20 O 1.36505 * 131.50942 * 179.97438 * 13 12 11 21 21 H 0.97003 * 120.00519 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.46914 * 60.00570 * 9 7 2 23 23 H 1.08988 * 109.47786 * 299.99915 * 9 7 2 24 24 H 1.08998 * 109.46961 * 60.00884 * 10 9 7 25 25 H 1.08999 * 109.47607 * 300.00300 * 10 9 7 26 26 H 1.08004 * 119.96188 * 359.96089 * 12 11 10 27 27 H 1.08003 * 119.94274 * 0.03743 * 17 11 10 28 28 H 1.09004 * 110.57019 * 214.33308 * 19 18 14 29 29 H 1.09002 * 110.57590 * 91.45191 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5285 -2.6365 -0.0009 12 6 6.2181 -2.6365 1.1973 13 6 7.6038 -2.6370 1.2009 14 6 8.2997 -2.6382 -0.0047 15 6 7.6025 -2.6382 -1.2036 16 9 8.2742 -2.6398 -2.3758 17 6 6.2180 -2.6370 -1.1990 18 8 9.6387 -2.6379 0.2641 19 6 9.7544 -3.0487 1.6393 20 8 8.5058 -2.6366 2.2255 21 1 -0.4851 0.8400 0.0004 22 1 3.8751 -0.6804 0.8889 23 1 3.8745 -0.6800 -0.8910 24 1 3.6579 -3.1505 -0.8908 25 1 3.6585 -3.1503 0.8892 26 1 5.6762 -2.6358 2.1315 27 1 5.6758 -2.6367 -2.1330 28 1 10.5901 -2.5414 2.1215 29 1 9.8705 -4.1303 1.7076 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260464644.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:31 Heat of formation + Delta-G solvation = -110.486751 kcal Electronic energy + Delta-G solvation = -16227.337075 eV Core-core repulsion = 13223.050080 eV Total energy + Delta-G solvation = -3004.286995 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.04731 -43.21091 -39.39286 -37.35200 -35.65941 -33.75588 -31.29816 -30.68825 -27.45439 -26.42749 -24.15339 -23.74588 -22.04886 -19.32557 -19.21233 -18.72472 -18.57319 -17.72486 -16.85554 -16.53514 -16.32594 -16.17519 -15.30502 -15.05935 -14.91411 -14.65585 -14.10830 -14.03126 -13.80043 -13.56156 -13.07163 -12.84197 -12.72974 -12.20541 -11.81634 -11.63875 -11.41347 -11.31416 -10.73557 -9.76039 -9.18540 -8.26580 -6.29963 -0.11402 -0.07006 1.38130 1.40122 1.51090 1.60177 2.28577 2.35995 2.38067 2.92272 3.09635 3.51028 3.70261 3.78306 3.97346 4.12954 4.18413 4.26669 4.53750 4.70264 4.72233 4.86577 4.99439 5.06327 5.25332 5.29291 5.48812 5.66317 5.67907 5.96869 6.30500 6.78797 7.34824 8.89810 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.033926 B = 0.005853 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.115733 B = 4782.665517 C = 4979.493941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.007 3.993 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.528 4.528 8 H 0.041 0.959 9 C -0.007 4.007 10 C -0.058 4.058 11 C -0.028 4.028 12 C -0.110 4.110 13 C 0.061 3.939 14 C -0.031 4.031 15 C 0.113 3.887 16 F -0.136 7.136 17 C -0.142 4.142 18 O -0.320 6.320 19 C 0.204 3.796 20 O -0.315 6.315 21 H 0.265 0.735 22 H 0.021 0.979 23 H 0.020 0.980 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.154 0.846 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.843 -6.362 2.143 20.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.172 1.172 7 C -0.566 4.566 8 H 0.060 0.940 9 C -0.044 4.044 10 C -0.096 4.096 11 C -0.029 4.029 12 C -0.129 4.129 13 C 0.016 3.984 14 C -0.076 4.076 15 C 0.093 3.907 16 F -0.115 7.115 17 C -0.160 4.160 18 O -0.237 6.237 19 C 0.094 3.906 20 O -0.231 6.231 21 H 0.074 0.926 22 H 0.039 0.961 23 H 0.038 0.962 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.172 0.828 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 19.924 -6.158 2.210 20.971 hybrid contribution 0.137 0.742 -0.190 0.778 sum 20.061 -5.416 2.020 20.877 Atomic orbital electron populations 1.70051 1.08190 1.28044 1.52832 1.25918 0.95482 1.03204 0.94361 0.85774 0.79559 0.78902 0.79149 1.19312 1.21198 1.17194 1.21483 0.91833 0.93326 1.49966 0.94035 1.19524 0.93863 0.94108 0.96912 1.20463 0.87287 0.98151 1.03663 1.19741 0.96792 0.95332 0.90987 1.20253 0.88801 1.03557 1.00247 1.19545 0.91938 1.02279 0.84662 1.19737 0.83949 1.09562 0.94352 1.16673 0.89388 1.06697 0.77935 1.91487 1.80435 1.94183 1.45381 1.21059 0.90039 1.04024 1.00927 1.87368 1.19334 1.85532 1.31421 1.26231 0.87269 1.02324 0.74825 1.87357 1.19468 1.84914 1.31343 0.92565 0.96102 0.96191 0.90249 0.90329 0.82834 0.81796 0.81554 0.87249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.66 13.96 21.45 0.30 -58.36 15 2 C 0.01 0.41 5.47 84.66 0.46 0.88 15 3 Si 0.94 43.72 27.47 68.60 1.88 45.60 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 15 6 H -0.25 -10.78 6.54 99.48 0.65 -10.13 15 7 C -0.53 -29.14 9.66 25.60 0.25 -28.89 15 8 H 0.04 2.49 7.99 -2.91 -0.02 2.46 15 9 C -0.01 -0.29 4.02 29.85 0.12 -0.17 15 10 C -0.06 -2.02 5.28 29.85 0.16 -1.87 15 11 C -0.03 -0.84 5.13 -19.86 -0.10 -0.94 15 12 C -0.11 -3.11 9.71 22.35 0.22 -2.89 15 13 C 0.06 1.69 7.15 22.58 0.16 1.85 15 14 C -0.03 -0.89 7.13 22.61 0.16 -0.72 15 15 C 0.11 3.30 7.31 22.43 0.16 3.46 15 16 F -0.14 -4.03 17.27 44.97 0.78 -3.26 15 17 C -0.14 -4.02 9.67 22.32 0.22 -3.80 15 18 O -0.32 -8.19 11.41 -76.80 -0.88 -9.07 15 19 C 0.20 3.46 8.89 113.37 1.01 4.46 15 20 O -0.31 -7.64 11.40 -76.10 -0.87 -8.51 15 21 H 0.27 15.35 8.31 -92.71 -0.77 14.58 15 22 H 0.02 0.91 7.20 -2.38 -0.02 0.89 15 23 H 0.02 0.86 7.57 -2.39 -0.02 0.84 15 24 H 0.08 2.65 8.08 -2.39 -0.02 2.63 15 25 H 0.08 2.63 8.08 -2.39 -0.02 2.61 15 26 H 0.15 3.95 8.06 -2.91 -0.02 3.93 15 27 H 0.16 4.14 8.06 -2.91 -0.02 4.11 15 28 H 0.17 1.54 8.14 -2.38 -0.02 1.52 15 29 H 0.11 1.29 8.14 -2.39 -0.02 1.27 15 Total: -1.00 -66.37 261.31 5.14 -61.23 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 1.11 Total: 1.01 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 2.81 Total: -28.64 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.30 Total: -58.36 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.74 Total: -17.58 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.60 kcal Total: -66.37 5.14 -61.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260464644.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.260 kcal (2) G-P(sol) polarization free energy of solvation -66.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds