Wall clock time and date at job start Mon Mar 30 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48499 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47371 * 300.00380 * 3 2 1 6 6 H 1.48503 * 109.46982 * 60.00194 * 3 2 1 7 7 C 1.37876 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00290 * 359.97438 * 7 2 1 10 10 H 1.09002 * 108.52429 * 60.00240 * 9 7 2 11 11 O 1.41705 * 108.58178 * 302.15184 * 9 7 2 12 12 C 1.42974 * 115.39940 * 171.58486 * 11 9 7 13 13 C 1.51293 * 108.14429 * 85.52903 * 12 11 9 14 14 C 1.38059 * 120.51517 * 112.68965 * 13 12 11 15 15 C 1.38311 * 119.67555 * 180.02562 * 14 13 12 16 16 C 1.38486 * 120.07808 * 359.97438 * 15 14 13 17 17 F 1.35101 * 119.97172 * 180.02562 * 16 15 14 18 18 C 1.38583 * 120.05142 * 359.95814 * 16 15 14 19 19 C 1.37987 * 119.18929 * 292.70647 * 13 12 11 20 20 C 1.51293 * 119.18376 * 0.02562 * 19 13 12 21 21 O 1.41710 * 108.57925 * 177.85424 * 9 7 2 22 22 H 0.97005 * 119.99856 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.71395 * 325.88725 * 12 11 9 24 24 H 1.09000 * 109.81831 * 205.22411 * 12 11 9 25 25 H 1.08003 * 120.15861 * 359.97438 * 14 13 12 26 26 H 1.07993 * 119.96164 * 179.97438 * 15 14 13 27 27 H 1.07997 * 120.18243 * 180.02562 * 18 16 15 28 28 H 1.08997 * 109.71635 * 307.63980 * 20 19 13 29 29 H 1.09006 * 109.74591 * 187.02571 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6299 -2.5405 -0.8954 11 8 0.4065 -2.5330 1.1370 12 6 -0.5156 -3.6247 1.1840 13 6 0.1914 -4.8125 1.7990 14 6 -0.1912 -5.2929 3.0354 15 6 0.4675 -6.3795 3.5817 16 6 1.5052 -6.9816 2.8900 17 9 2.1468 -8.0432 3.4253 18 6 1.8851 -6.4969 1.6485 19 6 1.2255 -5.4114 1.1091 20 6 1.6247 -4.8636 -0.2435 21 8 2.1876 -3.5613 -0.0514 22 1 -0.4850 0.8401 0.0004 23 1 -0.8424 -3.8736 0.1744 24 1 -1.3778 -3.3541 1.7933 25 1 -1.0005 -4.8220 3.5738 26 1 0.1722 -6.7589 4.5487 27 1 2.6938 -6.9650 1.1071 28 1 0.7466 -4.7930 -0.8854 29 1 2.3641 -5.5197 -0.7030 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260465030.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:27 Heat of formation + Delta-G solvation = -109.915933 kcal Electronic energy + Delta-G solvation = -16810.382988 eV Core-core repulsion = 13806.120745 eV Total energy + Delta-G solvation = -3004.262243 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.73223 -39.70002 -37.28395 -35.03838 -32.84668 -31.55549 -30.92159 -27.20055 -26.12936 -24.65610 -22.62284 -21.57124 -20.70067 -17.38422 -16.98665 -16.40953 -16.07185 -15.68790 -15.44997 -14.96049 -14.58316 -14.30252 -13.71907 -13.58296 -13.08544 -12.96899 -12.44441 -11.89330 -11.82553 -11.41719 -11.00371 -10.91513 -10.72349 -10.43301 -10.13842 -9.53648 -9.10554 -8.90405 -8.76163 -8.36644 -8.26463 -6.19616 -4.30434 1.33391 1.41737 3.24945 3.32340 3.38262 3.70559 4.26864 4.39498 4.83197 4.89828 4.97650 5.02947 5.14173 5.36055 5.37844 5.57725 5.70741 5.84052 5.94584 6.01791 6.19083 6.24654 6.29444 6.49355 6.60766 6.88532 7.09398 7.67601 7.83520 8.37261 8.61974 8.98187 9.40891 10.89093 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.043874 B = 0.006530 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.038318 B = 4286.730243 C = 4468.498814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.077 3.923 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.358 3.642 10 H 0.012 0.988 11 O -0.350 6.350 12 C 0.088 3.912 13 C -0.105 4.105 14 C -0.081 4.081 15 C -0.158 4.158 16 C 0.085 3.915 17 F -0.146 7.146 18 C -0.140 4.140 19 C -0.076 4.076 20 C 0.092 3.908 21 O -0.385 6.385 22 H 0.264 0.736 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.134 0.866 28 H 0.060 0.940 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -10.649 2.529 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.552 4.552 8 H 0.094 0.906 9 C 0.266 3.734 10 H 0.029 0.971 11 O -0.270 6.270 12 C 0.011 3.989 13 C -0.105 4.105 14 C -0.099 4.099 15 C -0.177 4.177 16 C 0.066 3.934 17 F -0.125 7.125 18 C -0.159 4.159 19 C -0.076 4.076 20 C 0.015 3.985 21 O -0.306 6.306 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.078 0.922 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.498 -10.378 2.689 10.825 hybrid contribution 0.134 0.234 0.129 0.299 sum -1.364 -10.144 2.818 10.616 Atomic orbital electron populations 1.70040 1.06118 1.27092 1.46642 1.25016 0.94979 0.99540 0.93435 0.86264 0.80183 0.82226 0.77727 1.19290 1.20688 1.20599 1.20818 0.93684 0.87541 1.53159 0.90611 1.20879 0.83055 0.84911 0.84547 0.97078 1.88343 1.47790 1.42374 1.48484 1.21520 0.92876 0.85642 0.98894 1.20905 0.96724 0.97664 0.95228 1.20845 0.99467 0.95026 0.94565 1.21076 0.97202 0.98411 1.00981 1.17680 0.94770 0.87262 0.93730 1.91458 1.80786 1.54137 1.86127 1.20899 1.01656 0.98453 0.94892 1.20454 0.94588 0.94112 0.98463 1.21587 0.98776 0.87146 0.90984 1.87955 1.36737 1.13762 1.92099 0.92601 0.92979 0.89620 0.84922 0.85124 0.84832 0.92156 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.62 12.71 55.43 0.70 -23.92 15 2 C 0.08 2.13 5.38 -17.82 -0.10 2.03 15 3 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 7 C -0.51 -14.78 9.05 -34.44 -0.31 -15.09 15 8 H 0.08 2.17 7.81 -52.48 -0.41 1.76 15 9 C 0.36 9.49 2.65 36.00 0.10 9.58 15 10 H 0.01 0.33 7.79 -51.93 -0.40 -0.07 15 11 O -0.35 -9.13 9.31 -58.64 -0.55 -9.68 15 12 C 0.09 1.77 6.31 36.30 0.23 2.00 15 13 C -0.10 -1.90 5.48 -104.49 -0.57 -2.48 15 14 C -0.08 -1.25 9.71 -39.62 -0.38 -1.64 15 15 C -0.16 -2.29 10.03 -39.46 -0.40 -2.68 15 16 C 0.08 1.31 7.30 -39.36 -0.29 1.02 15 17 F -0.15 -2.20 17.27 2.25 0.04 -2.16 15 18 C -0.14 -2.23 9.70 -39.54 -0.38 -2.62 15 19 C -0.08 -1.36 5.49 -104.51 -0.57 -1.93 15 20 C 0.09 1.70 6.31 36.30 0.23 1.93 15 21 O -0.38 -9.26 10.11 -58.64 -0.59 -9.85 15 22 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 23 H 0.05 0.99 6.97 -51.93 -0.36 0.63 15 24 H 0.09 1.54 7.96 -51.93 -0.41 1.13 15 25 H 0.13 1.73 8.00 -52.48 -0.42 1.31 15 26 H 0.13 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.13 1.83 8.00 -52.49 -0.42 1.41 15 28 H 0.06 1.04 6.97 -51.93 -0.36 0.68 15 29 H 0.09 1.38 7.96 -51.93 -0.41 0.97 15 LS Contribution 255.50 15.07 3.85 3.85 Total: -1.00 -30.87 255.50 -6.78 -37.65 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -2.76 Total: -2.15 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.45 Total: -9.86 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.70 Total: -23.92 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -1.14 Total: -19.53 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.87 -6.78 -37.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465030.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.267 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds