Wall clock time and date at job start Mon Mar 30 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48499 * 109.46945 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47371 * 300.00380 * 3 2 1 6 6 H 1.48503 * 109.46982 * 60.00194 * 3 2 1 7 7 C 1.37876 * 119.99499 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00290 * 359.97438 * 7 2 1 10 10 H 1.09002 * 108.52429 * 60.00240 * 9 7 2 11 11 O 1.41705 * 108.58178 * 302.15184 * 9 7 2 12 12 C 1.42974 * 115.39940 * 171.58486 * 11 9 7 13 13 C 1.51293 * 108.14429 * 85.52903 * 12 11 9 14 14 C 1.38059 * 120.51517 * 112.68965 * 13 12 11 15 15 C 1.38311 * 119.67555 * 180.02562 * 14 13 12 16 16 C 1.38486 * 120.07808 * 359.97438 * 15 14 13 17 17 F 1.35101 * 119.97172 * 180.02562 * 16 15 14 18 18 C 1.38583 * 120.05142 * 359.95814 * 16 15 14 19 19 C 1.37987 * 119.18929 * 292.70647 * 13 12 11 20 20 C 1.51293 * 119.18376 * 0.02562 * 19 13 12 21 21 O 1.41710 * 108.57925 * 177.85424 * 9 7 2 22 22 H 0.97005 * 119.99856 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.71395 * 325.88725 * 12 11 9 24 24 H 1.09000 * 109.81831 * 205.22411 * 12 11 9 25 25 H 1.08003 * 120.15861 * 359.97438 * 14 13 12 26 26 H 1.07993 * 119.96164 * 179.97438 * 15 14 13 27 27 H 1.07997 * 120.18243 * 180.02562 * 18 16 15 28 28 H 1.08997 * 109.71635 * 307.63980 * 20 19 13 29 29 H 1.09006 * 109.74591 * 187.02571 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6299 -2.5405 -0.8954 11 8 0.4065 -2.5330 1.1370 12 6 -0.5156 -3.6247 1.1840 13 6 0.1914 -4.8125 1.7990 14 6 -0.1912 -5.2929 3.0354 15 6 0.4675 -6.3795 3.5817 16 6 1.5052 -6.9816 2.8900 17 9 2.1468 -8.0432 3.4253 18 6 1.8851 -6.4969 1.6485 19 6 1.2255 -5.4114 1.1091 20 6 1.6247 -4.8636 -0.2435 21 8 2.1876 -3.5613 -0.0514 22 1 -0.4850 0.8401 0.0004 23 1 -0.8424 -3.8736 0.1744 24 1 -1.3778 -3.3541 1.7933 25 1 -1.0005 -4.8220 3.5738 26 1 0.1722 -6.7589 4.5487 27 1 2.6938 -6.9650 1.1071 28 1 0.7466 -4.7930 -0.8854 29 1 2.3641 -5.5197 -0.7030 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260465030.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:27 Heat of formation + Delta-G solvation = -129.023555 kcal Electronic energy + Delta-G solvation = -16811.211556 eV Core-core repulsion = 13806.120745 eV Total energy + Delta-G solvation = -3005.090811 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 238.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.92555 -41.17009 -38.88619 -36.81612 -34.84802 -32.97498 -32.32576 -29.11330 -27.59586 -26.26097 -24.29649 -23.15439 -22.02985 -19.14999 -18.49106 -18.11685 -17.59641 -17.24132 -16.67145 -16.57982 -16.36083 -15.85571 -15.27363 -14.94028 -14.57130 -14.45111 -13.92103 -13.60086 -13.28743 -12.85225 -12.81615 -12.74701 -12.34088 -12.00725 -11.89457 -11.44161 -10.92563 -10.79604 -10.35418 -10.01049 -9.58773 -8.28335 -6.49060 0.04573 0.18512 1.42207 1.43858 1.57700 2.33639 2.41721 2.92739 3.16341 3.29884 3.59533 3.69077 3.70607 3.87582 4.03976 4.11087 4.34979 4.45817 4.53173 4.57897 4.65421 4.85225 4.96101 5.06723 5.23102 5.54659 5.57033 5.80273 5.86609 6.46521 6.58065 7.01925 7.29984 8.81132 Molecular weight = 238.08amu Principal moments of inertia in cm(-1) A = 0.043874 B = 0.006530 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.038318 B = 4286.730243 C = 4468.498814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.031 3.969 3 Si 0.980 3.020 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.369 3.631 10 H -0.011 1.011 11 O -0.383 6.383 12 C 0.084 3.916 13 C -0.127 4.127 14 C -0.079 4.079 15 C -0.148 4.148 16 C 0.082 3.918 17 F -0.142 7.142 18 C -0.141 4.141 19 C -0.095 4.095 20 C 0.085 3.915 21 O -0.407 6.407 22 H 0.270 0.730 23 H 0.052 0.948 24 H 0.104 0.896 25 H 0.158 0.842 26 H 0.164 0.836 27 H 0.154 0.846 28 H 0.064 0.936 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 -11.360 3.638 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.172 4.172 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.082 0.918 9 C 0.277 3.723 10 H 0.006 0.994 11 O -0.303 6.303 12 C 0.007 3.993 13 C -0.128 4.128 14 C -0.097 4.097 15 C -0.166 4.166 16 C 0.063 3.937 17 F -0.121 7.121 18 C -0.159 4.159 19 C -0.095 4.095 20 C 0.009 3.991 21 O -0.328 6.328 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.122 0.878 25 H 0.175 0.825 26 H 0.182 0.818 27 H 0.172 0.828 28 H 0.082 0.918 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.375 -11.119 3.794 11.828 hybrid contribution 0.047 0.283 -0.177 0.337 sum -1.327 -10.836 3.616 11.500 Atomic orbital electron populations 1.70129 1.07472 1.28287 1.46871 1.25895 0.95919 1.02930 0.92488 0.85205 0.78736 0.77536 0.78281 1.19057 1.19252 1.19921 1.21143 0.93559 0.89556 1.54723 0.91754 1.20390 0.82840 0.85219 0.83834 0.99444 1.88197 1.48907 1.45168 1.48023 1.21708 0.92632 0.85228 0.99723 1.20831 0.97601 0.97599 0.96734 1.21113 0.99948 0.95133 0.93460 1.21419 0.95981 0.97306 1.01910 1.17819 0.94953 0.87302 0.93647 1.91475 1.80730 1.53885 1.85975 1.21071 1.01759 0.97784 0.95304 1.20415 0.95450 0.95305 0.98353 1.21900 0.99951 0.85101 0.92187 1.87872 1.37033 1.15565 1.92371 0.92120 0.92952 0.87827 0.82471 0.81823 0.82835 0.91791 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.68 12.71 21.45 0.27 -51.40 15 2 C 0.03 1.76 5.38 84.65 0.46 2.22 15 3 Si 0.98 43.64 29.54 68.60 2.03 45.66 15 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 15 5 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 7 C -0.55 -32.71 9.05 25.60 0.23 -32.47 15 8 H 0.06 3.81 7.81 -2.91 -0.02 3.79 15 9 C 0.37 20.30 2.65 71.24 0.19 20.49 15 10 H -0.01 -0.64 7.79 -2.39 -0.02 -0.66 15 11 O -0.38 -20.44 9.31 -126.47 -1.18 -21.62 15 12 C 0.08 3.39 6.31 71.42 0.45 3.85 15 13 C -0.13 -4.51 5.48 -19.78 -0.11 -4.62 15 14 C -0.08 -2.24 9.71 22.24 0.22 -2.03 15 15 C -0.15 -3.77 10.03 22.35 0.22 -3.55 15 16 C 0.08 2.30 7.30 22.41 0.16 2.47 15 17 F -0.14 -3.83 17.27 44.97 0.78 -3.06 15 18 C -0.14 -4.19 9.70 22.29 0.22 -3.97 15 19 C -0.09 -3.31 5.49 -19.79 -0.11 -3.42 15 20 C 0.08 3.11 6.31 71.42 0.45 3.56 15 21 O -0.41 -20.07 10.11 -126.47 -1.28 -21.35 15 22 H 0.27 14.46 8.31 -92.70 -0.77 13.69 15 23 H 0.05 2.06 6.97 -2.39 -0.02 2.04 15 24 H 0.10 3.69 7.96 -2.39 -0.02 3.67 15 25 H 0.16 3.62 8.00 -2.91 -0.02 3.59 15 26 H 0.16 3.08 8.06 -2.91 -0.02 3.06 15 27 H 0.15 3.82 8.00 -2.91 -0.02 3.80 15 28 H 0.06 2.26 6.97 -2.39 -0.02 2.24 15 29 H 0.12 3.59 7.96 -2.38 -0.02 3.57 15 Total: -1.00 -67.23 255.50 4.17 -63.06 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 1.17 Total: 6.18 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 2.38 Total: -17.48 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.27 Total: -51.40 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -2.46 Total: -42.97 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.06 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.23 4.17 -63.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260465030.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.960 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds